CK935644

Overview
NameCK935644
Unique NameCK935644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13462 contig Csv1_Contig13462:120..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935644 vs. ExPASy Swiss-Prot
Match: ARP9_ORYSJ (Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 112/173 (64.74%), Postives = 134/173 (77.46%), Query Frame = 1
Query:    4 EDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 522
            +DMLEDTW T        SD+ Y   N G  MW++YP+  T+ KK + IGL EA+ SSILSTGRI+LQRKLFCSIQL+GG A T GL P +E+RVL+ IPSN+ I+  EVLQSR+ P +V WKGG +LG+LD GRDAWIHREDW +NG+HIGSGRKY+DSYFLQAQAMCY NS
Sbjct:  422 DDMLEDTWQT--------SDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIELQRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPWKGGVILGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYNS 586          
BLAST of CK935644 vs. ExPASy Swiss-Prot
Match: ARP9_ORYSI (Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 112/173 (64.74%), Postives = 134/173 (77.46%), Query Frame = 1
Query:    4 EDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 522
            +DMLEDTW T        SD+ Y   N G  MW++YP+  T+ KK + IGL EA+ SSILSTGRI+LQRKLFCSIQL+GG A T GL P +E+RVL+ IPSN+ I+  EVLQSR+ P +V WKGG +LG+LD GRDAWIHREDW +NG+HIGSGRKY+DSYFLQAQAMCY NS
Sbjct:  422 DDMLEDTWQT--------SDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIELQRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPWKGGVILGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYNS 586          
BLAST of CK935644 vs. ExPASy Swiss-Prot
Match: ARP9_ARATH (Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.033e-58
Identity = 113/172 (65.70%), Postives = 132/172 (76.74%), Query Frame = 1
Query:    4 EDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 519
            E+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P +V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:  434 ENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595          
The following BLAST results are available for this feature:
BLAST of CK935644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP9_ORYSJ2.651e-6264.74Actin-related protein 9 OS=Oryza sativa subsp. jap... [more]
ARP9_ORYSI2.651e-6264.74Actin-related protein 9 OS=Oryza sativa subsp. ind... [more]
ARP9_ARATH3.033e-5865.70Actin-related protein 9 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004553_C04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935644 ID=CK935644; Name=CK935644; organism=Citrus sinensis; type=EST; length=684bp
GGGGAGGATATGCTAGAAGATACGTGGCATACAGATTTCCCCAGGAGGTC
TGACATATCAGATAACTTCTATCCTGGGATTAATGTTGGATTACCAATGT
GGGAGAGCTACCCAGTTTTGACAACTAAGCCAAAGAAAGAAGAGAAGATT
GGTCTTGCAGAAGCTGTAACAAGTAGCATTCTTTCAACTGGTCGTATTGA
CCTCCAGAGAAAATTGTTTTGTAGCATACAATTGATTGGTGGAGTGGCTT
TGACTGGTGGCCTCATTCCTGCTGTGGAGGAAAGAGTTTTGCATGCGATA
CCTTCAAATGAAGCAATTGATATGGTTGAGGTATTGCAATCAAGAACGAA
TCCAACTTATGTATCTTGGAAAGGCGGAGCTGTCCTTGGAATTCTAGACT
TCGGTAGGGATGCCTGGATTCATCGTGAGGACTGGATTCGCAATGGGATT
CACATTGGAAGTGGCAGAAAATACAAGGACTCCTATTTCCTTCAAGCACA
AGCGATGTGTTACATAAATTCTTGAAAGGTAAAAACAAGGTGTACCGCTC
CACTCTAATTTATGTTGCATCTTCCAGGTTGTAGTTTCCTGTTCTATTGG
AAACTTTCAATACGACATTTCTAGTCTGAAGTGTCAAAGTTTGTTACATT
TTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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