CK935660

Overview
NameCK935660
Unique NameCK935660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935660_ssr208 microsatellite CK935660_ssr208:208..222. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935660_ssr50 microsatellite CK935660_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.319e-77
Identity = 150/229 (65.50%), Postives = 171/229 (74.67%), Query Frame = 1
Query:  118 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFP---SRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            AH +L ++P +++ +L+  + NP                   +FHGVSLK       L LS AA A+ KPLT           LKGTS+VEGVVTLTQE+ GPTTVNV++TGLTPGPHG HLHE+GDTTNGC+STG HFNPN  THGAP+DE RHAGDLGNI+ANA+GVAEATIVDNQI L GPN VVGRAFVVHEL DDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:    3 AHCILFSSPAATT-SLIFPISNPNTAVSLPSS----------SFHGVSLKSTINRQSLTLSAAASAAPKPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPV 220          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.809e-76
Identity = 146/227 (64.32%), Postives = 168/227 (74.01%), Query Frame = 1
Query:  118 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKF-PSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            AH +L +AP  ++ +L++   +                    +F+G+S K  P+  +LSL+  A+ KPLT           LKGTSNVEGVVTLTQED GPTTVNVR++GL PG HG HLHE+GDTTNGCMSTG HFNP+  THGAP+DEVRHAGDLGNIVAN +GVAEATIVDNQI L GPN+VVGRA VVHELEDDLGKGGHELS TTGNAGGRLACGVVGLTPV
Sbjct:    3 AHTILASAPSHTTFSLISPFSSTPTNALSSSLQSS-------SFNGLSFKLSPTTQSLSLSTSAASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLTPV 222          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.669e-76
Identity = 140/186 (75.27%), Postives = 154/186 (82.80%), Query Frame = 1
Query:  244 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            +FHGVSLK  S+   +L+L++V S KP             LKGTSNVEGVVTLTQ+D GPTTV VR+TGL PG HG HLHE+GDTTNGCMSTG HFNPN +THGAP DEVRHAGDLGNI ANA+GVAEAT+VDNQI L GPN+VVGRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:   34 SFHGVSLKVKSKTPQSLTLSSVTSPKPFIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.068e-75
Identity = 149/227 (65.64%), Postives = 165/227 (72.69%), Query Frame = 1
Query:  115 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            MA   LV+  P SSH+LL T                       +F GVS+K   +   S  A ++ KPLT           LKGTS VEGVVTLTQ+D GPTTVNVR+TGLTPG HG HLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNIVANA GVAEATIVDNQI L GPN+VVGRA VVHEL+DDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:    1 MASQTLVSPSPLSSHSLLRT-----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.821e-75
Identity = 139/186 (74.73%), Postives = 154/186 (82.80%), Query Frame = 1
Query:  244 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            +F GVSL   ++   +L+L AV + KPLT           LKG SNVEGVVTL+Q+D GPTTVNVR+TGL PG HG HLHEYGDTTNGCMSTGAHFNPN +THGAP DE+RHAGDLGNIVANA+GVAE T+VDNQI L GPN+VVGRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:   32 SFLGVSLNVNAKFGQSLTLYAVTTPKPLTVFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 217          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.920e-75
Identity = 136/183 (74.32%), Postives = 151/183 (82.51%), Query Frame = 1
Query:  247 FHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            FHG+SLK   +   S+    + KPL+           LKGTS+VEGVVTL+QED GPTTV+VR+TGLTPG HG HLHE+GDTTNGCMSTGAHFNPN MTHGAP+D+VRHAGDLGNI+ANA GVAEATIVD QI L GPN V+GRA VVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP+
Sbjct:   33 FHGLSLKLTRQ---SIPLATAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 212          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.542e-74
Identity = 140/187 (74.87%), Postives = 155/187 (82.89%), Query Frame = 1
Query:  244 AFHGVSLKFPS--RL-NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            +F GVSL   +  RL ++S A  A  K LT           LKGTS+VEGVVTLTQ+D GPTTVNVR+TGLTPGPHG HLHE+GDTTNGC+STG HFNPNNMTHGAP+DE RHAGDLGNI ANA+GVAE TIVDNQI L GPN+VVGRAFVVHEL+DDLGKGGHELSLTTGNAGGRLACGV+GLTP+
Sbjct:   30 SFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.443e-72
Identity = 134/173 (77.46%), Postives = 144/173 (83.24%), Query Frame = 1
Query:  277 RLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            RL    A  A+ + L            LKGTS VEGVVTLTQ+D GPTTVNVRVTGLTPG HG HLHE+GDTTNGC+STG HFNPNN+THGAP+DEVRHAGDLGNIVANA GVAEATIVD QI L GPN+VVGRAFVVHELEDDLGKGGHELSL+TGNAGGRLACGVVGLTP+
Sbjct:   39 RLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 211          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.595e-71
Identity = 132/184 (71.74%), Postives = 150/184 (81.52%), Query Frame = 1
Query:  244 AFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            +F GVS+K   +   S  + +  +PL+           LKG S VEGVVTLTQE+  PTTVNVR+TGLTPG HG HLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNI+A+ANGVAEATIVDNQI L GPN+V+GRA VVHELEDDLGKGGHELSL+TGNAGGRLACGVVGLTPV
Sbjct:   21 SFSGVSVKLSPQF--STLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202          
BLAST of CK935660 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.554e-71
Identity = 130/169 (76.92%), Postives = 142/169 (84.02%), Query Frame = 1
Query:  289 SLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGLHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 795
            S+AA AS + +            LKGTS V+GVVTL QED GPTTVNVR+TGLTPG HG HLHEYGDTTNGC+STG+HFNPN +THGAP D VRHAGDLGNIVAN +G+AEATIVD+QI L G N+VVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV
Sbjct:   48 SIAAAASPRSMVVVAATKKAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 216          
The following BLAST results are available for this feature:
BLAST of CK935660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
SODCP_SOLCS3.319e-7765.50Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL2.809e-7664.32Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_PETHY3.669e-7675.27Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PEA1.068e-7565.64Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLLC1.821e-7574.73Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_VITVI6.920e-7574.32Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_ARATH1.542e-7474.87Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_ORYSJ1.443e-7277.46Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA1.595e-7171.74Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ZANAE3.554e-7176.92Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935660 ID=CK935660; Name=CK935660; organism=Citrus sinensis; type=EST; length=869bp
GCGGGGAGCAATCACCAGAAACACAAAATCGNNNTATCAATTAACATCAT
CCGTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAG
CCGCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCT
TCATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCG
CTCTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCC
ACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCC
GTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGT
GGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCC
AAGAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACT
CCTGGGCCTCACGGGTTACACCTACACGAATATGGTGATACGACAAATGG
GTGTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTG
CTCCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCT
AACGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACT
GGATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGTTCATGAGCTTG
AGGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAACCACTGGCAAT
GCAGGTGGAAGACTGGCATGCGGTGTCGTTGGCTTGACTCCGGTATGAGA
TCAGCAAAACCAGTGTGGTTGCACTATATGCTGCATGCTTTTTCCAGATT
ATCAATCGGAGCCAAGTAC
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