CK935671

Overview
NameCK935671
Unique NameCK935671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:95..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.367e-57
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 2
Query:  104 LFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATPSNGYDPKFFG 559
            L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILAT SNGYDP FFG
Sbjct:    8 LLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.839e-47
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  161 SFQGLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATPSNGYDPKFF 556
            SF GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT SNGYDP FF
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.182e-42
Identity = 91/139 (65.47%), Postives = 107/139 (76.98%), Query Frame = 2
Query:  143 ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATPSNGYDPKFFG 559
            +SP +++   L P + RA      ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT SNGYDP FFG
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  266 NTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATPSNGYD 544
            NT  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT +NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  260 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 376
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CK935671 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  254 KAELNTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATPS 532
            KA L+  +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA  S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of CK935671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH4.367e-5772.55Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.839e-4775.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU5.182e-4265.47Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU7.780e-2253.76Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA8.622e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE2.774e-1141.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004553_A03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935671 ID=CK935671; Name=CK935671; organism=Citrus sinensis; type=EST; length=800bp
GCGGGGGAACTCAAAAACCCCATCATCCANNNAGGCATCAACCAGAACAC
AAAAAAGAAGGAAAAAGAGGGGAAAAAAAAGAAAAATGGCAGCCTCATCC
TCCTTGTTCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACC
CTCCAGCATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAA
CCCCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGC
ATTAAAGCTGAGCTGAACACACCACTTGTCATCAGCCTCAGCACTGGCCT
CTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACG
TGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCC
GGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCC
AGTTGGCTTTAACATTGTTGATGTTCTCGCTTGGGGTTCCATTGGCCATA
TTGTCGCTTACTACATCTTGGCCACCCCCAGCAACGGCTATGATCCCAAG
TTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTTGTCTCTTTTAG
TTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAGTTAATAAATTTCCTAG
CATTTAATGGATGAGACCGATGATGTAATCTTTGCATTTTTCACATTTTT
AACGTGCATGTTTTTTTCNNAAAAAAAAAAAAAAAAAAAAAAAAAAANNN
NAAAAAAAAAAAAAAAAAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAANN
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