CK935703

Overview
NameCK935703
Unique NameCK935703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935703_ssr40 microsatellite CK935703_ssr40:40..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7291 contig Csv1_Contig7291:52..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.666e-29
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRK 713
            WVFGYGSL+W   F Y++K +GF+K + R F     DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G N DYLF+L  A+  +  E  DD++  L   V++
Sbjct:    2 WVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVKQ 174          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 76/179 (42.46%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRK 713
            WVFGYGSL+W   F Y EK++G+I  Y R F     DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI  AVGP G N +YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:    2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP--FNVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.849e-28
Identity = 74/165 (44.85%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 677
            WVFGYGSL+W   F Y EK++G I+ Y R F     DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI  AVGP G N +YLF+L  +M ++  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKP--FDVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 73/181 (40.33%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 719
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++ ++  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKP--FSVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERL 175          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 719
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 719
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 68/161 (42.24%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 656
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   35 WIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 70/180 (38.89%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HEDDYIIELANEV 707
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M   G   +D+++  + + V
Sbjct:   34 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQP--LKALAYVATP---QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAV 205          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 70/181 (38.67%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  183 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 719
            WVFGYGSL+W   F Y +K++G+I  Y R F     DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  +M  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEP--FSVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDADEHLFSLEKLVKERL 163          
BLAST of CK935703 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  171 KMVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDS--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 656
            K   W+FGYGSLVW P F+Y    +G+IK Y+R F      HRG  + P R  TL +  +   WGVA+ V G   +E  +++YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:   10 KSSLWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEE--SLKYLNVREAVRGGYLTRAVDFFPRGTNQPP--VQALVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
The following BLAST results are available for this feature:
BLAST of CK935703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC2_DANRE2.666e-2941.34Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA2.947e-2842.46Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK3.849e-2844.85Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN1.910e-2740.33Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT4.256e-2739.78Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE4.256e-2739.78Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE2.582e-2442.24Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC1_HUMAN5.752e-2438.89Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC2_BOVIN7.513e-2438.67Cation transport regulator-like protein 2 OS=Bos t... [more]
CHAC1_DANRE2.855e-2339.63Cation transport regulator-like protein 1 OS=Danio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004552_E10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935703 ID=CK935703; Name=CK935703; organism=Citrus sinensis; type=EST; length=889bp
GGGGGCTCGTGTCTCAATTGCACCCACACGAGAGACGGGGAGAGAGAGAG
AGAGAGAGGAAGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACC
TTAGGCGTTTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCC
TTTCTCTCGCGATTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATGGA
TCATTGGTGTGGAACCCAGGGTTTGAATATGATGAGAAAATTTTAGGCTT
CATCAAGGACTACAGGCGCGTGTTTGATCTTGCATGCATTGATCACAGGG
GTACACCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAA
ACCATTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAGGA
AAGACTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTA
AGACCCTTGTAGACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTCTA
ACTGGGGTTATAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTA
TTATCTGGGGCCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGG
CTGTCGGACCCTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAAG
GCCATGTTTGATATTGGTCATGAGGACGACTACATAATAGAGCTGGCAAA
TGAAGTGAGGAAAGAGCTTGGAACTGCTGAAAAAGGAATTCTCAAGGAGA
GGAAGTTGGTTGGGTCATCATCCCGCATGCCGCTCACAAAATCTCATATT
CCAACCCTTCAACTGGGTCTACGCCCTGAGGCGGTGGCCATGGATTCATA
AGAACACAAGGCTGACAGACACCATAGGCCTAGGNNNCT
back to top