CK935716

Overview
NameCK935716
Unique NameCK935716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9675 contig Csv1_Contig9675:492..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935716 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.666e-16
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 2
Query:    8 TSALLTVASLVPXXKGASVESKSDGFXXSDAELWNGRFAMLGLVALAFTEFVKGGTLV 181
            TSA+L +A+L+P  +G S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  140 TSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CK935716 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.482e-16
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 2
Query:    5 GTSALLTVASLVPXXKGASVESKSDGFXXSDAELWNGRFAMLGLVALAFTEFVKGGTLV 181
            GTS LL++ASL+P  +G SVESKS     SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  138 GTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CK935716 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 2
Query:    8 TSALLTVASLVPXXKGASVESKSDGFXXSDAELWNGRFAMLGLVALAFTEFVKGGTLV 181
            T+ + +VASL+P  +G SVESKS G   +DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  172 TAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
The following BLAST results are available for this feature:
BLAST of CK935716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DS22_CRAPL2.666e-1665.52Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI_PEA3.482e-1671.19Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU9.483e-1463.79High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004552_E06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935716 ID=CK935716; Name=CK935716; organism=Citrus sinensis; type=EST; length=333bp
GGGGGGGACCAGTGCTTTGCTCACGGTTGCGTCCCTGGTTCCTNNNNTTA
AAGGTGCCAGCGTGGAGTCTAAATCGGATGGGTTCANNNCTTCGGATGCT
GAGTTGTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTT
CACCGAGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAG
ATCTGTAGATCTGTATTTTTTTTAACTAATTAATGTATGAGATCCTACTG
TAATTAAATCTCTATTTCTCATGCCATTCTGTAATTCAACCACCATTTTC
TAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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