CK935717

Overview
NameCK935717
Unique NameCK935717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935717_ssr85 microsatellite CK935717_ssr85:85..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2145 contig Csv1_Contig2145:62..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935717 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  168 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 437
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96          
The following BLAST results are available for this feature:
BLAST of CK935717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN2.503e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004552_E07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935717 ID=CK935717; Name=CK935717; organism=Citrus sinensis; type=EST; length=713bp
GGGGAAAATCGAAACGAACACTGCAATGCACTGTCCTCCTCAAATCTTAA
TCCGCCATCCATTTTTGAGTTTCTTATTCTAATTAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGGAATGGGATTTCCGTCGGAAGTTAGAGATATTTTTG
CATCCAGAAGGTCAAATAACTCGCCACTGATTGCCTCTCCTGCTGAAGAT
CTAAAGGCTAAGGCCGCCAACGACTGCGTTCAAGAAGGCGTTCGAGCTGG
ATTAAAGGCCGCTGCCGTAATGTGTGTTGTCACCGCTGTGCCGACGTTGG
TTGCAGTTCGAAAAATTCCTTGGGCAAAGGCAAACCTGAATTATACTGGT
CAGGCACTCATCATATCCGCAGTGTCAATTGCTTCTTACTTCATCACTGT
TGACAAGACTATTTTGGAGTGTGCAAGGAGGAATGCCCAGTATGGCAAAC
CAACTTGAGATTCTGTACCTGAAGCAATTCACCATGAAGATGCCATGATA
TGCGTAGTGAGCATAGCACACAGGTTCATATGAGAATATTTAAATGTATT
TGAGACAATTTTTTTCCCCACTTGAGCAACCGATGGAATTCTCGTGCAAT
AAGTTTACCATTTTATCTTTGGCTGATATCTCTATACTAACTTATCCTTA
TTGATATGATTATGAGAAATTAGCGAGCAGTCGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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