CK935728

Overview
NameCK935728
Unique NameCK935728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.860e-43
Identity = 84/177 (47.46%), Postives = 116/177 (65.54%), Query Frame = 3
Query:  159 KEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAI 686
            K   ++YL QLQ  PLRTKAITAGVL+G SD ++QK+SG++K           F  G+  P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V ++++K YP VQ T+W  +P V W+N++Y P  FR +  SLVA  W IF+ L+A S  +
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 53/167 (31.74%), Postives = 92/167 (55.09%), Query Frame = 3
Query:  177 YLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDFGY-GVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 671
            Y+ +L+ +P++TKA+T+  L+  S  +AQK   +EK             +G    P  H+ +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP   + K     +P ++  SWKVWP    +NF++ P   R LF +LV  CW I++++ A
Sbjct:   17 YMKKLKSKPIQTKALTSATLSFISSVVAQKF--IEKKKINWNAVVKFTVWGLISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  156 VKEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKIS----GVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 659
            +K A   YL QL   P+ TKA+T+G L   SD++ Q I       +K           F F    P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK    +++K++KD+     +   VWP + +VNF Y     R  F ++    W  F+
Sbjct:    8 LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 49/178 (27.53%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  144 MSNIVKEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 659
            + ++ K A  +YL+ L++ P+ TKA+++G+L+   + +AQ I   ++             +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+ EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNVSVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.640e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  144 MSNIVKEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 659
            + ++ K A  +YL+ L+  P+ TKA+++G+L+   + +AQ I   +K             +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+ EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.773e-13
Identity = 49/177 (27.68%), Postives = 85/177 (48.02%), Query Frame = 3
Query:  159 KEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDFGYGV-------PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVV---EGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 659
            + A  +YL  L++ P+ TKA T+G+L+   + +AQ I   +K               Y +       P GHF    ++         +  K++LL++L+F+P     F++ F LV+   EG+   +   K++  +      +W+VW  V ++N  Y P QFR LF +LVA  W  ++
Sbjct:   19 RRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAP----AFLSLFFLVMNFLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: MPV17_CAEBR (Mpv17-like protein OS=Caenorhabditis briggsae GN=CBG20693 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 43/180 (23.89%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  171 RKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD*MEAP 710
            R +   L  RPL T+ I +G + G  DA  Q ++G +                +  P  +   + L+ +     +  V  ++ ++Q +FSP+ N + +    L+ EG  +   + K++ D+  V  +S ++WP V  +NF + P  +R +   +VA  W  +++ K ++ A++   +EAP
Sbjct:    5 RTFNATLARRPLATQVIVSGAVCGAGDAFTQYLTGQKSWDYKRTARFTCLAAVFIAPPLNVWFRVLERVRHSNRHAQVFSRMSIDQFMFSPFFNAIILVNLRLL-EGFSFSKSVDKMKNDWYDVYTSSLRLWPAVQLINFYFVPLNYRVILIQVVAFFWNSWLSFKTQTPALEDPTIEAP 183          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12
Identity = 45/176 (25.57%), Postives = 80/176 (45.45%), Query Frame = 3
Query:  156 VKEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKIS-------GVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 662
            +++ W  YL  L   PL TK+++ G L G  D +AQ++           K               Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    +       ++    ++ + AV+  +W +WP    +NF   P   R L+ S+++  W +F++
Sbjct:    1 MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.040e-12
Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 3
Query:  159 KEAWRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKISGVEKXXXXXXXXXXX------FDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 659
            + A  +YL+ L++ P+ TKA T+G+L+   + +AQ I    K                 + F +  P  HF   F++         +  +++LL++L+F+P    LF      + EGK   +   K+R  +      +W+VW  + ++N  Y P +FR LF +L A  W  ++
Sbjct:   19 RRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190          
BLAST of CK935728 vs. ExPASy Swiss-Prot
Match: MPV17_RAT (Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.176e-11
Identity = 47/171 (27.49%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  168 WRKYLIQLQVRPLRTKAITAGVLAGCSDAIAQKI---SGVEKXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 671
            WR Y   L   P + + +TAG L G  D I+Q++    G+++              G+  P      + LD +  G    +  KK+LL+Q  F+P     F+   G V+ G        K+++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGPVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKA 173          
The following BLAST results are available for this feature:
BLAST of CK935728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PMP22_ARATH9.860e-4347.46Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PX24C_DICDI1.694e-1831.74PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PX24D_DICDI2.989e-1530.23PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PXMP2_MOUSE5.638e-1427.53Peroxisomal membrane protein 2 OS=Mus musculus GN=... [more]
PXMP2_RAT1.640e-1328.09Peroxisomal membrane protein 2 OS=Rattus norvegicu... [more]
PXMP2_BOVIN4.773e-1327.68Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
MPV17_CAEBR8.141e-1323.89Mpv17-like protein OS=Caenorhabditis briggsae GN=C... [more]
PX24B_DICDI1.814e-1225.57PXMP2/4 family protein 2 OS=Dictyostelium discoide... [more]
PXMP2_HUMAN4.040e-1226.01Peroxisomal membrane protein 2 OS=Homo sapiens GN=... [more]
MPV17_RAT1.176e-1127.49Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004552_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935728 ID=CK935728; Name=CK935728; organism=Citrus sinensis; type=EST; length=913bp
GGGGGAGATCAAACCAAGTGAAACCAGCTTGTCATTTCCTTAACTAAATT
TCTTTATCATCGCATTGTGGTGACTCCTCTCTTGACATTGAGCTTTTGGA
GAGAAGTTATTGTTGATCATCACAGGCTTCACAACCGCCAGCCATGTCTA
ATATAGTCAAAGAAGCTTGGAGAAAATATCTTATACAACTCCAAGTTCGC
CCTTTGAGAACCAAGGCAATCACAGCTGGGGTACTAGCTGGGTGTAGTGA
TGCAATTGCCCAGAAGATTTCTGGGGTCGAAAAGCTTCAACTGAAAAGAT
TGCTGCTTCTTATGCTTTTTGACTTCGGATATGGAGTACCATTTGGGCAT
TTTCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACAACAAATC
TGTTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCCCCTTGGATCA
ACTTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGAAAACCATGG
GGTTCAGTCATGAAGAAAGTTCGAAAGGACTATCCTGCTGTTCAGTTTAC
TTCATGGAAGGTTTGGCCAACTGTTACTTGGGTGAATTTCCAGTACGCCC
CTCAGCAATTCCGAGAACTCTTTTTCAGCTTGGTTGCCTCCTGCTGGGCT
ATCTTCATCAATTTGAAAGCTGAATCCGCTGCAATCAAGAAGGACTAGAT
GGAGGCTCCAAGGGGTCTAACCGGTCGAGTGATTTTCAAGTAGCCGAGTC
TAAATCCTGAGGAAAGGAGGGATTTAAAAAATTGGTTTCAGTTTTGGCCA
ACCTTTTGCCTTTTTAAAATTAGCTAAATATAACAAGTAGGACTAGATGG
AGGAATTGTTTTTTTAATTTGTCTTTGGGACTACTATTCAATGATTGGAT
GTCTGCATTTTAT
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