CK935784

Overview
NameCK935784
Unique NameCK935784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2256 contig Csv1_Contig2256:5..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_ARATH (SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 9.834e-65
Identity = 129/197 (65.48%), Postives = 153/197 (77.66%), Query Frame = 1
Query:  241 IQPVEDLPPKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELVFESEKAGGSVEGSNLG---------SKNSKNLTLERKGDGVGGLESKVESSSQVGS 804
            +QP+E+LPPKLQEIV+LFQSVQEPKAKYEQL+FYGK+L PLD++FKTRENKVEGCVSQVWVRA+ D+++NVVYEADSDSVLTKGLAALLV+GLS RPV EI+++TPDF VLLGLQQSL+PSRNNG LNMLKLMQKKA+ L  + E+   S E S              N   + LE K D V  L ++    S+ GS
Sbjct:   77 LQPIEELPPKLQEIVKLFQSVQEPKAKYEQLMFYGKNLTPLDSQFKTRENKVEGCVSQVWVRAFFDEERNVVYEADSDSVLTKGLAALLVKGLSGRPVPEILRITPDFAVLLGLQQSLSPSRNNGLLNMLKLMQKKALHLEVKGEEDSSSGESSESSFVSIPETKDEANVPEVDLESKPDLVEDLGTEKIDDSESGS 273          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: Y1419_SYNY3 (Uncharacterized sufE-like protein slr1419 OS=Synechocystis sp. (strain PCC 6803) GN=slr1419 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.263e-34
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  259 LPPKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAV 654
            LPP L +IV+ FQ   +PK +YEQLL+YGK L+P+    K   NKV+GCVSQV++ A L+D K V+Y+ DSD+ L KGL ALL+QGL+     EIV++TPDF+   GLQ SLTPSR NGF N+ K+MQ KA+
Sbjct:   18 LPPNLAKIVERFQRHTDPKKRYEQLLWYGKKLEPMMEEGKIAANKVQGCVSQVYITADLEDGK-VMYQGDSDAQLVKGLVALLIQGLNGLTPTEIVELTPDFIEATGLQVSLTPSRANGFYNIFKMMQTKAI 148          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_DICD3 (Cysteine desulfuration protein sufE OS=Dickeya dadantii (strain 3937) GN=sufE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAAL---LVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELV 663
            P  Q++++ F      + KY  ++  G  L PL    +   N+V GC SQVW+    ++Q NVV   DSD+ + KGL A+   L QGLS R + E+  V P F   L L Q LTPSR+ G   ML+ ++ +A  L+
Sbjct:    5 PDPQKLLRNFSRCSNWEEKYLYIIELGAGLAPLSDAQRQDGNRVSGCQSQVWIDLASNEQGNVVLHGDSDAAIVKGLIAIVFSLYQGLSVREIVEL-DVRP-FFASLALTQHLTPSRSQGLEAMLRAVRARASALI 138          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_PECCP (Cysteine desulfuration protein sufE OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=sufE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAAL---LVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELV 663
            P+ Q++ + F    + + KY  ++  G+ L PL   ++  +N + GC SQVW+ A  D+Q  +V   DSD+ + KGL A+   L QGL+ + + E+  V P F   L L Q LTPSR+ G   ML+ ++  A  L+
Sbjct:    5 PEPQKLARNFARCNDWEEKYLYIIELGERLDPLPDEWRNPDNLISGCQSQVWIVAQPDEQGVIVLHGDSDAAIVKGLIAVVFSLYQGLTAQEIVEL-DVRP-FFESLALNQHLTPSRSQGLEAMLRAIRAHAAALL 138          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_ERWCT (Cysteine desulfuration protein sufE OS=Erwinia carotovora subsp. atroseptica GN=sufE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAAL---LVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELV 663
            P+ Q++ + F    + + KY  ++  G+ L PL   ++  EN + GC SQVW+    D+Q  ++   DSD+ + KGL A+   L QGL+ + + E+  V P F   L L Q LTPSR+ G   ML+ ++  A  L+
Sbjct:    5 PEPQKLARNFARCNDWEEKYLYVIELGERLDPLPDEWRNPENLISGCQSQVWIVTQPDEQGVLILHGDSDAAIVKGLIAVVFSLYQGLTAQEIVEL-DVRP-FFESLALNQHLTPSRSQGLEAMLRAIRAHAAALL 138          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERP3 (Cysteine desulfuration protein sufE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sufE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++IV +    F   L L Q LTPSR+ G   M++ ++ K  +L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIVSLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVADL 137          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERE8 (Cysteine desulfuration protein sufE OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sufE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAA---LLVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  +N + GC SQVW+      +  VV+  DSD+ + KGL     +L QGL+ + + ++  V P F   L L Q LTPSR+ G   M++ ++ KA  L
Sbjct:    5 PDKDKLIRNFSRCLNWEEKYLYVIELGAQLPPLTEQQRQPDNLISGCQSQVWIAMSTSTEGQVVFAGDSDAAIVKGLVVVVFILYQGLTPQQIIDL-DVRP-FFADLALSQHLTPSRSQGLEAMIRAIRAKAAVL 137          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPY (Cysteine desulfuration protein sufE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPS (Cysteine desulfuration protein sufE OS=Yersinia pseudotuberculosis GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137          
BLAST of CK935784 vs. ExPASy Swiss-Prot
Match: SUFE_YERPP (Cysteine desulfuration protein sufE OS=Yersinia pestis (strain Pestoides F) GN=sufE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  265 PKLQEIVQLFQSVQEPKAKYEQLLFYGKSLKPLDTRFKTRENKVEGCVSQVWVRAYLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKV-TPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVEL 660
            P   ++++ F      + KY  ++  G  L PL  + +  EN + GC SQVW+   L  + +V++  DSD+ + KGL A++     +   ++I+ +    F   L L Q LTPSR+ G   M++ ++ K   L
Sbjct:    5 PDRDKLIRNFSRCLNWEEKYLYIIELGGQLAPLTEQQRHPENLISGCQSQVWIAMTLSAEGHVIFAGDSDAAIVKGLVAVVFILYHDLTPQQIISLDVRPFFADLALSQHLTPSRSQGLEAMIRAIRTKVANL 137          
The following BLAST results are available for this feature:
BLAST of CK935784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SUFE_ARATH9.834e-6565.48SufE-like protein, chloroplastic OS=Arabidopsis th... [more]
Y1419_SYNY35.263e-3456.06Uncharacterized sufE-like protein slr1419 OS=Synec... [more]
SUFE_DICD31.592e-1437.50Cysteine desulfuration protein sufE OS=Dickeya dad... [more]
SUFE_PECCP6.050e-1435.29Cysteine desulfuration protein sufE OS=Pectobacter... [more]
SUFE_ERWCT2.299e-1334.56Cysteine desulfuration protein sufE OS=Erwinia car... [more]
SUFE_YERP31.648e-1130.08Cysteine desulfuration protein sufE OS=Yersinia ps... [more]
SUFE_YERE82.810e-1131.85Cysteine desulfuration protein sufE OS=Yersinia en... [more]
SUFE_YERPY3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia ps... [more]
SUFE_YERPS3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia ps... [more]
SUFE_YERPP3.670e-1129.32Cysteine desulfuration protein sufE OS=Yersinia pe... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004390_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935784 ID=CK935784; Name=CK935784; organism=Citrus sinensis; type=EST; length=805bp
GGGGAATGCTCTGTCTTTTGAGCGTTACGGTGCGGTGTCCGTTTCTCTCT
CGATTGCTCTGGCTCTCTAGCAATGGCTTCATCATCAATCTCCTCTTGTC
TTCGCTTATTCACAACCAGATCATTCCTTTCACCAAAACCCCGCAAAAAT
CTCTCTTTCTTTTACAAACCCACAAGCTTCGCCAAAAACCCACTCTCAAA
ATCACTCGTTGCAGTCTCATCATCAACCTCCACGTCACCAATACAGCCCG
TCGAAGACCTCCCGCCAAAGCTTCAAGAAATCGTCCAGCTCTTTCAGTCA
GTGCAAGAACCCAAAGCCAAGTACGAGCAGCTACTGTTCTACGGAAAAAG
TTTGAAACCCCTCGATACCCGGTTCAAAACGAGGGAGAACAAAGTGGAAG
GCTGCGTTTCTCAGGTCTGGGTCAGGGCTTATCTTGATGACCAAAAGAAC
GTTGTGTACGAAGCTGATTCTGATTCCGTTTTGACCAAAGGATTGGCGGC
TCTGCTTGTTCAAGGCTTGTCTAATAGGCCTGTAGAGGAGATTGTGAAAG
TTACGCCTGATTTTGTTGTGCTTCTTGGGTTGCAACAGAGTTTGACTCCT
TCTAGGAATAATGGGTTCTTGAATATGTTGAAGTTGATGCAAAAGAAAGC
AGTTGAATTGGTTTTTGAGAGTGAGAAGGCTGGTGGCTCTGTTGAGGGAT
CGAATTTGGGGTCGAAAAATAGTAAAAATTTGACTTTGGAGAGGAAAGGT
GATGGTGTTGGAGGTTTGGAGTCAAAGGTTGAATCAAGCTCTCAAGTGGG
TAGTG
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