CK935797

Overview
NameCK935797
Unique NameCK935797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935797_ssr24 microsatellite CK935797_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935797_ssr293 microsatellite CK935797_ssr293:293..316. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935797_ssr532 microsatellite CK935797_ssr532:532..553. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935797 vs. ExPASy Swiss-Prot
Match: P2A01_ARATH (Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:  567 DENIEVVKLSHVCWMDVRGKFKISELSPGVMYEIVYVVKLTNAAFGWEAPVSLK 728
            +EN+E V L +VCW+D+ GKF    L+PG++YE+V+ VKL + A+GW+ PV+LK
Sbjct:  123 NENVEAVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLK 176
The following BLAST results are available for this feature:
BLAST of CK935797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
P2A01_ARATH2.789e-1251.85Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004390_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935797 ID=CK935797; Name=CK935797; organism=Citrus sinensis; type=EST; length=730bp
GGGGGACCAGAGTTTCCATTAGAATATATATATGTNNNNAAAACAGCTTN
ACCGACGGTTCGCTTCAGATTAAATCAATGAATTTCAAGAAGAAGGCTGC
AACAGAAACGAACAAGACTCATGAAGAATTCCTCGAATACAAGAGGAAGG
TCCAATCTTGTCTCCCTCATCTCTTTCTTTATTTCTCTTAATTTGCACAT
TAAATGGTTGGATTGTTTATGCTGTGCTGATAATTGTTTTATTAAACAAT
TAATTATTACTTAAGCTTATAAACTAATGATTTATGCAATCCTATATATA
TATATATATATATATACAGAAAACATGGATCGATAACAAGACGGGGTATA
AGTGCTTCGTGCTGTATCCCAGGTCACTTTTTGTTACTTGGGGCAACCGC
GATCACTGGACTTGGAATTGCTTCAAAGAAACGAGGTCAGATCAGCACTG
AATCCAATCCAAATCTCGTTATCGATTATGTATAAAGACATTTTATTTAA
AATAAATACATGAATAAATTAACAAACGTACATATATATATATATATATA
TATGTATGTATGCAGTGATGAAAACATAGAAGTGGTGAAACTAAGCCACG
TATGCTGGATGGATGTAAGAGGCAAGTTCAAGATATCGGAACTGTCCCCG
GGGGTTATGTATGAGATCGTGTACGTGGTGAAGTTGACAAATGCAGCATT
TGGATGGGAAGCACCGGTCAGCCTCAAGCT
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