CK935804

Overview
NameCK935804
Unique NameCK935804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935804_ssr423 microsatellite CK935804_ssr423:423..434. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935804_ssr726 microsatellite CK935804_ssr726:726..737. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1858 contig Csv1_Contig1858:1..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 55/204 (26.96%), Postives = 93/204 (45.59%), Query Frame = 1
Query:  148 VAPRRNHSRPSLSYRPMMVTVAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS 720
            + P+ N  RP   + P+ V+   +T             P   K Y T     +   L +A            MR+ + A    + P LC+AACELVGG++E               S IH++LP  D   L  + KPT +  +  +  +L  D++L F  E + +S   AG    RI+  + E+ +++G++G+V GQ  +++C+
Sbjct:   40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCT 237          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14
Identity = 64/237 (27.00%), Postives = 103/237 (43.46%), Query Frame = 1
Query:   67 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTVAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTY 777
            ++FFLS  + K       LS+    + +  +      S S     V  + S+    K+Y       +   L  A            MR+ + A    + P LC+AACEL GG                  S +H++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A++    G +S RI+RV+ E+ + +GS+G+V GQ  ++ CS+         GI DV + +
Sbjct:   15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSE---------GIADVGLEH 234          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  325 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 738
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E LAS+ +    +  R++R + E+ +A+G++G+V GQ  ++     D +D
Sbjct:  107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLND 243          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.065e-14
Identity = 52/168 (30.95%), Postives = 77/168 (45.83%), Query Frame = 1
Query:  235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 738
            KSY       I   L  A            MR+ + A    + PALC+AACELVGG+                 S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A S      +S RI+R + E+ +A+G++G+V GQ  ++      + D
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVD 244          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14
Identity = 48/161 (29.81%), Postives = 74/161 (45.96%), Query Frame = 1
Query:  235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ 714
            ++YWT++  +I   L +A            MR+ V A     AP  +CVAACEL GG R                S IH++LP  D    + + KP+ +  +     +L  DA+ P   + + S   P       ILR++ E+ R +GS G+  GQY +L+
Sbjct:   48 RTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLE 207          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  325 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD 729
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  +  +  +L  DA+L F  E LAS+ + +  +  R++R + E+ +A+G++G+V GQ  ++     D
Sbjct:  103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 235          
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 50/178 (28.09%), Postives = 80/178 (44.94%), Query Frame = 1
Query:  235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVE 768
            K Y  S  E I   L +A            MR+ + A    + P LC+AACELVGG                  S I ++LP  D   L  + KPT +  F  +  +L   A+L    E L  +D     +S +++R + E+ +++G++G+V GQ  +L     + +D    G+ D+E
Sbjct:   82 KPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQND---VGLEDLE 251          
The following BLAST results are available for this feature:
BLAST of CK935804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GGPPS_CAPAN5.983e-1526.96Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO1.741e-1427.00Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH2.274e-1432.61Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_HEVBR5.065e-1430.95Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGR_ARATH8.639e-1429.81Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPPS_SINAL4.288e-1331.85Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH6.191e-1228.09Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004390_D05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0002_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935804 ID=CK935804; Name=CK935804; organism=Citrus sinensis; type=EST; length=852bp
GGGGAACACTCATAATTTTTCTCCACCCAATCCTTTCTCTCCTTCACTCA
CCTTTCTTCGTATATAGTTAATTTCTTCCTTTCTATTTGTCTTTTGAAGT
CTGCACCAATGGCTAAAGCCCTCTCTGTTTTAAACCTACCGGCTCATGTT
GCCCCTAGGCGAAATCACAGCCGTCCATCATTGTCCTACAGACCTATGAT
GGTCACCGTGGCCATGTCCACACCCAATAAGAATAAATCATATTGGACGT
CTGTACATGAGGATATTGGGGCCCACCTCCGGCAGGCCGTCGTCGTAAAG
GAGCCGGTAGAAGTTTACGAGCCCATGCGCCATTTTGTCTTCGCCGCCCC
AGTCAACATGGCGCCCGCGCTGTGTGTGGCAGCCTGTGAGCTCGTCGGGG
GCCACCGCGAACAAGCCATTGTTGCTGCTGCTGCTTTGCACGTCATGCAT
GCAGCTTCTTTCATTCATGAAAATCTTCCACTATCAGATAGGACTAGTCT
TATCCCCAAATCCAAGCCCACGATGTATCACGCTTTCAAACCAAATACGG
AGCTTCTCGTGGCTGATGCAATGCTTCCGTTTGGGCTGGAGTTGTTGGCC
AGCTCCGACAACCCGGCCGGAAACAACTCGGGTCGGATTTTACGTGTGAT
GGTTGAGATGACACGCGCCATGGGATCACAAGGTGTTGTGGAGGGGCAGT
ACAATGAGCTACAATGTAGTCAATGTGATGATGATGATCGGAAATTGAAT
GGTATTACAGATGTGGAAATGACCTATGAAACATACAAGAAAAAGGAAGG
TCGGTTGCACGCGTGTGGCGCGGCGTGTGGAGCAATATTAGGAGGTGGGA
GT
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