EY756595

Overview
NameEY756595
Unique NameEY756595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6379 contig Csv1_Contig6379:226..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.638e-54
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 2
Query:  230 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQE  ++FM +HPEMDFS+A+
Sbjct:  143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 330          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.798e-53
Identity = 104/188 (55.32%), Postives = 133/188 (70.74%), Query Frame = 2
Query:  230 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQE  ++FM +HPEMDFS+A+
Sbjct:  143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 330          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.655e-53
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 2
Query:  230 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            Q+A   E + D        PN GNG DL +Y WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQE  ++FM +HPEMDFS+AR
Sbjct:  143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAR 330          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.389e-52
Identity = 101/187 (54.01%), Postives = 132/187 (70.59%), Query Frame = 2
Query:  233 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            K    + + D N      PN GNG DL NY WTQ L E+ +++P  V    K + V+ +I++  L+VGLKG PP+IDGEL   VK ++  W IED KTV++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQ+  ++FM +HPEMDFS+A+
Sbjct:  153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAK 339          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.369e-52
Identity = 100/169 (59.17%), Postives = 128/169 (75.74%), Query Frame = 2
Query:  287 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            PN GNG DL NY WTQ L E+ ++VP  V    K + ++ +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ PENSKLSDLD ETRS VEKMM+DQRQKSMGLP+SDE +KQE  ++FM +HPEMDFS+A+
Sbjct:  161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 329          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.662e-38
Identity = 79/163 (48.47%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  320 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            Y WTQ +++V V++PV A  K R +   +KK+ +KV +KG+     IDG+    +KP +  W++E       K VSI L K NQMEWW  ++   P+ID  K+ PENS LSDLD ETR+ VEKMM+DQRQK MG P+SDE +K +  ++F  EHPEMDFS A+
Sbjct:   34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAK 196          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.015e-35
Identity = 71/159 (44.65%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  314 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            + Y+W+Q L + T+S+ +    KS+ +  +I  +HL V  L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  +++P+NS LSD D ETR+ VEKM+++Q +K+ GLP++DE +KQ  FE F  EHP+MDFS A+
Sbjct:   11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAK 169          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.596e-32
Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  305 LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQENFEEFMAEHPEMDFSRAR 787
            L+   Y W Q + +V + + VP GT+++ +  ++  + LK+ +    +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   +EPENSKLSDLD ETR+TVEKMM +Q QK      +DE ++++  + FM +HPE+DFS  R
Sbjct:    6 LEEAEYEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC3_PONAB (NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 49/174 (28.16%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  224 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQE 733
            +V + PP  P++       + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +    G+  +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID  K+  E S ++ +D E ++ ++++ FD  QK  G P S E++  E
Sbjct:  160 EVPREPPVLPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHE 329          
BLAST of EY756595 vs. ExPASy Swiss-Prot
Match: NUDC3_HUMAN (NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 49/174 (28.16%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  224 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPSSDEMQKQE 733
            +V + PP  P++       + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +    G+  +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID  K+  E S ++ +D E ++ ++++ FD  QK  G P S E++  E
Sbjct:  160 EVPREPPILPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHE 329          
The following BLAST results are available for this feature:
BLAST of EY756595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NUDC_MOUSE5.638e-5455.32Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_RAT2.798e-5355.32Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_BOVIN3.655e-5355.32Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_CHICK1.389e-5254.01Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_HUMAN2.369e-5259.17Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_EMENI9.662e-3848.47Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_DICDI2.015e-3544.65Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_SCHPO1.596e-3240.49Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
NUDC3_PONAB7.959e-1628.16NudC domain-containing protein 3 OS=Pongo abelii G... [more]
NUDC3_HUMAN1.039e-1528.16NudC domain-containing protein 3 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-D06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756595 ID=EY756595; Name=EY756595; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGAGGCGTTCGAGTTTGTGGCTAAAGAGAGCGATTTCCTGA
CGAAGGACGCTGCCGAGAAGCAGATCGTGGCGGCCATGCGAGCGGCCAAG
GAGAAGAGTAGTAATACTAAGAAGCAGCCGCAGCCCCAGTCGCCGCACCA
GGAGGAGGTTAAGGCTAAGAAAATGAAGGAAGAGAAGAAGGAGGAGGAGA
AATTCGAGGATTTGCCGACGATGAAGGTGCAGAAAGCTCCGCCGCCGGAG
CCTCAATTGGATGCCAATGGCAATCCTGCTAGAGCTCCAAATAAAGGCAA
TGGTCTTGATTTGGAGAATTACTCCTGGACACAAATCCTGCAAGAGGTGA
CTGTCAGTGTTCCGGTTCCTGCTGGTACAAAATCAAGGTTTGTTTTATGT
GAGATAAAGAAGAACCATCTTAAAGTTGGACTCAAGGGGCAGCCTCCCAT
AATTGATGGGGAGCTTCATATGGCCGTTAAGCCTGATGATTGTTATTGGA
GCATAGAGGACCAGAAAACTGTTTCTATTCTTTTGACCAAGCAGAATCAG
ATGGAGTGGTGGAAGTGTCTGATAAAAGGAGGCCCTGAAATTGACACTCA
GAAAGTTGAACCTGAGAACAGTAAATTATCTGACCTGGATCCAGAGACTA
GGTCGACTGTTGAAAAGATGATGTTTGACCAGAGGCAAAAGTCCATGGGC
CTGCCGAGCAGCGACGAGATGCAGAAACAGGAGAATTTTGAAGAATTCAT
GGCTGAGCATCCAGAGATGGACTTCTCTAGAGCCAGATCTCATAATAGTC
TCCTTATTAGGATGTGCAGTGGATGCACGTCAAAAGTTCTAGTGGATTTC
CAGTTTTGTTTGCAGCCCCGCAGCTTTCTATAGATGGTTGATTTTGTTAT
ATTTGTAACAGGATTGGACATG
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