EY739262

Overview
NameEY739262
Unique NameEY739262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY739262 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 1.150e-107
Identity = 179/203 (88.18%), Postives = 189/203 (93.10%), Query Frame = 2
Query:   62 WVGVPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVXYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGTLVTAYSLRKGIGXLDV 670
            WV  PKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKV YRSNPAREAFVEMC DEYVQKMTFDSYLYK+V PG+PLED+KLAVNTIG+LV A +LR+ I  L V
Sbjct:  266 WV-FPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          

HSP 2 Score: 48.1358 bits (113), Expect = 1.150e-107
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 3
Query:   12 ENLAEMYVGDDVSPDFYGWVSP 77
            E+LAEMYVGDDVSPDFYGWV P
Sbjct:  248 EDLAEMYVGDDVSPDFYGWVFP 269          
BLAST of EY739262 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 2.800e-106
Identity = 175/203 (86.21%), Postives = 183/203 (90.15%), Query Frame = 2
Query:   62 WVGVPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVXYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGTLVTAYSLRKGIGXLDV 670
            WV  PKCDHVAVGTGTVTHK DIKKFQLATR RA  KI GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKV YRSNPAREAFVEMCADEYVQKMTFDSYLYKKV PGNP+EDLKLAVNTIG+LV A +LR+ +  L V
Sbjct:  263 WV-FPKCDHVAVGTGTVTHKADIKKFQLATRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          

HSP 2 Score: 50.0618 bits (118), Expect = 2.800e-106
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 3
Query:   12 ENLAEMYVGDDVSPDFYGWVSP 77
            ENLAEMYVGDDVSPDFYGWV P
Sbjct:  245 ENLAEMYVGDDVSPDFYGWVFP 266          
BLAST of EY739262 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.001e-98
Identity = 161/196 (82.14%), Postives = 180/196 (91.84%), Query Frame = 2
Query:   62 WVGVPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVXYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGTLVTAYSLRK 649
            WV  PKCDHVAVGTGTVTHK DIKKFQ ATR RAKD+I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKV YRSN AREAFVEMCAD+YVQ+MTFDSYLYK+VVPGNPL+D+KLAVNTIG+LV A +LR+
Sbjct:  262 WV-FPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRR 456          

HSP 2 Score: 45.4394 bits (106), Expect = 2.001e-98
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = 3
Query:   12 ENLAEMYVGDDVSPDFYGWVSP 77
            E  AEMYVGDDVSPDFYGWV P
Sbjct:  244 EERAEMYVGDDVSPDFYGWVFP 265          
BLAST of EY739262 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.183e-64
Identity = 124/195 (63.59%), Postives = 148/195 (75.90%), Query Frame = 2
Query:   62 WVGVPKCDHVAVGTGTV-THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVXYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGTLVTAYSL 643
            WV  PK DHVAVGTGT+  +K  IK  Q   R RA  K+ GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+  S NG R+  E DL++Y+++WDK Y  TY VLD+LQ+V YR++  REAFVEMC+D  VQK+TFDSYLYK VVP NPL  +K+   TIG+L+   +L
Sbjct:  212 WV-FPKYDHVAVGTGTMKVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
BLAST of EY739262 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.690e-21
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   62 WVGVPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVXYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGTL 625
            WV  P     ++G GT     D+      T  R    +   + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA +   ++G       DL+     + K +   +KVL ++Q   Y S+  RE FV +C D  VQ+MTF+SY+ KK+    PL++LK+    +  L
Sbjct:  201 WV-FPHGKTASIGMGT--ELPDVSLKDCTTLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382          

HSP 2 Score: 29.261 bits (64), Expect = 2.690e-21
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   24 EMYVGDDVSPDFYGWVSP 77
            ++Y    +SPDFYGWV P
Sbjct:  187 DVYYDGRISPDFYGWVFP 204          
The following BLAST results are available for this feature:
BLAST of EY739262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH1.150e-10788.18Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC2.800e-10686.21Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.001e-9882.14Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY34.183e-6463.59Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA2.690e-2135.45Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-055-B08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY739262 ID=EY739262; Name=EY739262; organism=Citrus sinensis; type=EST; length=865bp
CACGCGTCCGTGAGAACTTGGCGGAGATGTACGTTGGTGATGATGTGTCG
CCGGACTTTTATGGGTGGGTGTCCCCAAGTGTGATCATGTGGCAGTTGGT
ACAGGCACAGTGACACACAAAGGTGATATCAAGAAGTTCCAACTTGCAAC
TAGAAACCGGGCCAAGGACAAAATCCTTGGTGGCAAGATCATTCGAGTGG
AGGCACACCCGATTCCTGAACACCCCCGCCCGCGGAGGTTATCGGGGAGA
GTGGCATTAGTCGGAGATGCAGCCGGGTACGTCACGAAATGCTCTGGCGA
AGGCATTTACTTTGCGGCAAAGAGTGGAAGAATGTGTGCGGAGGCCATCA
TTGAAGGGTCAGAGAATGGAACCAGGATGATCGATGAAGGGGACTTGAGG
AAGTATTTGGAGAAGTGGGATAAGACTTACTGGCCAACTTATAAGGTACT
GGATGTATTGCAGAAGGTGTNTTACCGATCGAATCCAGCGAGGGAAGCAT
TTGTGGAGATGTGTGCCGATGAGTATGTGCAGAAGATGACATTTGATAGC
TATTTGTATAAAAAAGTGGTGCCCGGAAACCCATTGGAGGATTTGAAGTT
GGCTGTGAATACTATTGGGACCTTGGTGACAGCTTATTCACTTAGGAAGG
GAATTGGTTNACTGGACGTGTGAGGATGGGGAGAGGACACGAAGTTGGGT
TCGTATTTATGTGTCAAAAAACGTGTCGCAGCAAGGGGCACAAAGTGAGA
GTAAGGATAACCCACAGACAGGAGGTAATACGCGAACAAGCGTCAAACCT
CCTCAGTAAATCCAATCTGTGGTCGCGTCGGGAGGGGCGGCACGGTTGAG
GATGATTGTTTTGAG
back to top