EY736164

Overview
NameEY736164
Unique NameEY736164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY736164 vs. ExPASy Swiss-Prot
Match: PSMD9_MOUSE (26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:   95 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRS*RRRLAELRNDHKEITEKIDENIRLLHS 340
            ++I  LM ++  +EA++ A  D L    G G++  LVD EG+PR D+D++ VR+ R  +  L+NDHK + ++++E +  LH+
Sbjct:   21 SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHA 102
[Close]
BLAST of EY736164 vs. ExPASy Swiss-Prot
Match: PSMD9_HUMAN (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 30/91 (32.97%), Postives = 55/91 (60.44%), Query Frame = 2 
Query:   68 AKMVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRS*RRRLAELRNDHKEITEKIDENIRLLHS 340
            +   G    +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  +  L+NDHK + ++++E +  LH+
Sbjct:   12 SSQAGAVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHA 102
The following BLAST results are available for this feature:
BLAST of EY736164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSMD9_MOUSE7.253e-1136.5926S proteasome non-ATPase regulatory subunit 9 OS=... [more]
PSMD9_HUMAN7.253e-1132.9726S proteasome non-ATPase regulatory subunit 9 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-G01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736164 ID=EY736164; Name=EY736164; organism=Citrus sinensis; type=EST; length=885bp
CACGCGTCTGGAAGCTTTGAATTCTCATTCTGACAAGGCGGATTTTTTTT
TTTTTTAATCATTGAAAGCAAAAATGGTGGGAACAAATTTGAAAGCAGAG
ATTATGAGTTTAATGGAGAAGCGAAGCGCCTTGGAAGCCGATATGAACGC
CATCATCGACCGCCTCAGCCAATCCAACGGCCCTGGTCTCTCCGGCAATC
TCGTTGACTCTGAGGGTTTTCCTCGCACGGATATTGATATTCATCTTGTG
CGATCATAACGGCGTCGTCTTGCCGAGCTGCGGAATGATCATAAGGAGAT
TACAGAGAAAATAGATGAGAATATACGCCTTTTGCATTCTGGAACGATCG
TTCCACTTCCACCATCTCGGCGGGATTCACGTGATGATGGCGGGTCGAAT
ACTCACAACGTTGCAGTCTCGGAACGGTTCAGTCTGCATCCTTTAGTAGT
GCTGTCGCGAGATGATGGTTTGCGTGCATGCGTGTGGGTTGGATGGTTCG
AAGACCCTTTGCCCCGTCTTACTTTTAGGCGGTCTGGTTTTCTGTGGGCA
GATAAGGTGTGGGGTCTAGGCATTACGTCGTGTAGCGTTGTTTGGTTTAG
TGTGTGTCATCAGTGGGGGGAGGGTGCCGTCTCTCTGTCGCGGGGTGTAT
GATTATGGTGATGTTACTTGTGCCCTTCAATTAGAAAGCAGTGAATCTGT
TTGTGATCAGTGTTTCTGACGGGCGTGAATCGCCCACCATCGACGGCGGC
CCTCTCCCGCGACAAACGCGTCCGCCAACTAACCCCGCCACGGCACACCG
CGGATCCCACCGCGCCGACTCCCCCGAAGGAGTGCTCAAAGGCAGACCGC
AGTGGGAGAACACGCGGGGGGGGGCACAAAACTAC
back to top