EY736159

Overview
NameEY736159
Unique NameEY736159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7011 contig Csv1_Contig7011:397..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_XENLA (Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis GN=rab3gap1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.206e-24
Identity = 80/272 (29.41%), Postives = 131/272 (48.16%), Query Frame = 3
Query:   15 NLPREIHGAPPESFIVKLSEVIGSFK----NLRKMALFWCKVVAELRRLWSEEQHIPGIPLDETPDLNSCLLYQQLQVINCCLSRKRRHTIATE------SLESVMRQCSSNV------------------------EDSSPC---MDTMPETPVLYARVCTGELVIRLGA------YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGCXQ--------LLSDMQAFKAANPXCSLKDFVRWHSPPDWTETDQSDE 677
            NL  ++  AP  S   KL+  +         ++ +A  W + V E+R  W     IPG+  + +PDL  CLL+Q+LQ++NCCL RK+      +      S ES + + +S++                        E+   C    + + E+    AR    E             +Q  +L++L +GEP+Y P++Q+   +T+DL++E  E++ + G+   G           LLSDM++FKAANP C L+DFVRW+SP D+ E +  D+
Sbjct:  444 NLYSQLKSAPSNSLTYKLALCLCMVNFYHGGVKGVAHLWQEFVLEMRYRWENNFLIPGLA-NGSPDLKCCLLHQKLQMLNCCLERKKARDEGKKGNPLYSSSESSVNKTASDLLSPVEADKSKYEVAKSWDSWSDSEEEFFECHSDTEELKESGQESARKAKEETKENPSPKPEGRLHQSGNLMLLNSGEPLYIPVTQDPAPMTDDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRDYIEEEVMDD 714          

HSP 2 Score: 23.483 bits (49), Expect = 1.206e-24
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  718 KGQLSRRIQKEGNWGGELWETS 783
            KG+LS R++   N   E WET+
Sbjct:  721 KGELSARMKIPNNMWVEAWETA 742          
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_RAT (Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.211e-24
Identity = 77/274 (28.10%), Postives = 124/274 (45.26%), Query Frame = 3
Query:   18 LPREIHGAPPESFIVKLSEVIGSFK----NLRKMALFWCKVVAELRRLWSEEQHIPGIPLDETPDLNSCLLYQQLQVINCCLSRKR-----RHTIATESLESV----------------MRQCSSNVEDSSPCMDTMPETPVLYARVCTGELVIRLGAYQPTD---------------------LIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGCXQ--------LLSDMQAFKAANPXCSLKDFVRWHSPPDWTETDQSDE 677
            L  +   AP +S   KL+  +         L+ +A  W + V E+R  W     IPG+     PDL  CLL+Q+LQ++NCC+ RK+     + T  ++S+                   +R       ++    D+  ++   +    +    +R    + T                      L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G           LLSDM++FKAANP C L+DFVRW+SP D+ E + +DE
Sbjct:  237 LYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGLA-SGPPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSPSDSMTKAYPADAGKAGGQLGLDHLRDTEKEKGEAGKSWDSWSDSEEEFFECLSDAEDLRGNGQESTKKGGPKDMAPLKPEGRLHQHGKLTLLRNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRDYIEEEVTDE 509          

HSP 2 Score: 24.2534 bits (51), Expect = 1.211e-24
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  715 MKGQLSRRIQKEGNWGGELWETS 783
            +KG+LS R++   N   E WET+
Sbjct:  515 LKGELSARMKIPSNMWVEAWETA 537          
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_DROME (Rab3 GTPase-activating protein catalytic subunit OS=Drosophila melanogaster GN=CG31935 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.187e-23
Identity = 77/241 (31.95%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   21 PREIHGAPPESFIVKLSEVIGS----FKNLRKMALFWCKVVAELRRLWSEEQHIPGIPLDETPDLNSCLLYQQLQVINCCLSRK-RRHTIATESLESVMRQCSSNVEDSSP--------CMDTMPETPVLYARVCTGELVIRLGAYQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAG------CXQLLSDMQAFKAANPXCSLKDFVRWHSPPDWTE-TDQSDEAK 683
            P  I  A P+S + +LS ++ +      ++  MA  W     +LR LW     +PGI     PD  +CLL+Q+LQ++N C+ R+ +R   +    E ++ + SS  E+           C D           V + +   RL      + ++ E  E +Y P +QE    TED +++  E++L+ G  G+G      C  LLSDM+AFKAANP   ++DF+RW+SP DW E TD+  + K
Sbjct:  442 PMRIKSAVPDSLVCRLSCLLATCHAHLGSVEGMAQVWAAFTRQLRLLWDNSLMVPGISAG-FPDTRTCLLHQKLQMLNVCVERRVQREANSKRKSEGMVGKASSEEEEDEDDDEGEFFDCDDLTAGAGSPTKAVLSLKPEGRLRRLN-NERLLEEPDEYLYIPDTQEPVPKTEDQLQDDAEVMLKLGP-GSGLTTQMMCTSLLSDMEAFKAANPRGIMEDFIRWYSPKDWEEVTDELGQVK 679          

HSP 2 Score: 22.7126 bits (47), Expect = 2.187e-23
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  715 MKGQLSRRIQKEGNWGGELWE 777
            +K QLS R+  EGN   ++WE
Sbjct:  678 VKHQLSIRMTTEGNTWQKVWE 698          
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_DANRE (Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.794e-22
Identity = 72/229 (31.44%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   96 LRKMALFWCKVVAELRRLWSEEQHIPGIPLDETPDLNSCLLYQQLQVINCCLSRKRRHTIATES------------------------LESVMRQCSSNVEDSSPCMDTMPETPVLYARVCTGELVIRL---GAYQPTDL-IMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGCXQ--------LLSDMQAFKAANPXCSLKDFVRWHSPPDWTETDQSD 674
            +R +A  W + V E+R  W     I G+     PDL  CLL+Q+LQ++NCC+ RK+      +S                         E+  +   S  +      + + +T  +       E   R    G  QP     +L T EP+Y PI+QE   +TEDL++E  E++ + G+   G           LLSDM++FKAANP C+L DFVRW+SP D+ E   +D
Sbjct:  475 VRAVAHLWQEFVLEMRYRWENNCLIYGLA-SGPPDLRCCLLHQKLQMLNCCIERKKARDDGKKSSSSDGARDRSRGAPEGAGPEGAGPAEAAGKSWDSWSDSEDEFFECVSDTEEMKEDKEEAENRSRSKPEGRLQPHGTHTLLNTQEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCTLLDFVRWYSPRDYVEEQVTD 702          

HSP 2 Score: 25.0238 bits (53), Expect = 1.794e-22
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  715 MKGQLSRRIQKEGNWGGELWETS 783
            ++G+LS R++  GN   E WET+
Sbjct:  709 VRGELSARMKIPGNMWVEAWETA 731          
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_HUMAN (Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.069e-18
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  417 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGCXQ--------LLSDMQAFKAANPXCSLKDFVRWHSPPDWTETDQSDE 677
            YQ   L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G           LLSDM++FKAANP CSL+DFVRW+SP D+ E +  DE
Sbjct:  621 YQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEEVIDE 715          

HSP 2 Score: 24.2534 bits (51), Expect = 5.069e-18
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  715 MKGQLSRRIQKEGNWGGELWETS 783
            +KG+LS R++   N   E WET+
Sbjct:  721 LKGELSARMKIPSNMWVEAWETA 743          
BLAST of EY736159 vs. ExPASy Swiss-Prot
Match: RB3GP_MOUSE (Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus GN=Rab3gap1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.135e-17
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  417 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGCXQ--------LLSDMQAFKAANPXCSLKDFVRWHSPPDWTETDQSDE 677
            +Q   L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G           LLSDM++FKAANP C L+DFVRW+SP D+ E + +DE
Sbjct:  621 HQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCFLEDFVRWYSPRDYIEEEVTDE 715          

HSP 2 Score: 24.2534 bits (51), Expect = 4.135e-17
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  715 MKGQLSRRIQKEGNWGGELWETS 783
            +KG+LS R++   N   E WET+
Sbjct:  721 LKGELSARMKIPSNMWVEAWETA 743          
The following BLAST results are available for this feature:
BLAST of EY736159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RB3GP_XENLA1.206e-2429.41Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_RAT1.211e-2428.10Rab3 GTPase-activating protein catalytic subunit (... [more]
RB3GP_DROME2.187e-2331.95Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_DANRE1.794e-2231.44Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_HUMAN5.069e-1846.32Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_MOUSE4.135e-1744.21Rab3 GTPase-activating protein catalytic subunit O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-F08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736159 ID=EY736159; Name=EY736159; organism=Citrus sinensis; type=EST; length=858bp
CACGCGTCCGGACAAATTTGCCTAGAGAAATTCATGGTGCGCCTCCTGAA
AGCTTTATTGTTAAGTTATCTGAAGTTATTGGAAGCTTTAAAAACCTGCG
AAAAATGGCATTGTTCTGGTGCAAAGTTGTTGCTGAGCTAAGAAGACTTT
GGTCCGAAGAGCAACATATTCCTGGCATTCCTCTAGATGAGACTCCAGAT
CTGAACTCCTGTCTCTTATACCAACAATTGCAGGTTATCAATTGCTGTCT
TTCAAGGAAAAGGCGCCATACTATTGCTACTGAATCCTTGGAATCTGTTA
TGAGGCAGTGCAGTTCGAATGTTGAGGATTCATCTCCTTGTATGGATACA
ATGCCTGAAACCCCTGTCTTGTACGCTAGAGTTTGCACTGGAGAACTTGT
TATCCGACTAGGAGCTTACCAGCCAACTGATTTAATAATGTTGGAGACTG
GTGAACCTGTATACTCCCCCATTTCTCAGGAAGGGCCTTTGCTCACAGAA
GATCTAATCAAAGAAACAGAGGAGTTAGTGCTTCGAACGGGGAGTGTTGG
TGCTGGGTGTNCTCAACTCCTGTCTGACATGCAGGCTTTCAAGGCTGCAA
ATCCTGNTTGTAGTTTAAAAGATTTTGTGAGATGGCATTCGCCGCCTGAT
TGGACTGAAACTGATCAGAGTGATGAGGCAAAAGAGTCCTCTGATGGGAA
GTGACTCTTCATCAATGAAAGGGCAACTAAGTCGTCGAATTCAAAAGGAA
GGTAATTGGGGGGGTGAACTGTGGGAAACTTCAAACCAGTACCAGCTCTT
ATAAAAGCCCTCCTTTGATGAGGAATGGGAATGGAGGGATCTTGGTGGCG
AAGGATAT
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