EY736151

Overview
NameEY736151
Unique NameEY736151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736151_ssr489 microsatellite EY736151_ssr489:489..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.728e-47
Identity = 103/208 (49.52%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAAQGTMFWALFVLGHDCGHGS SN+ K N+  G      S+LVP
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVG-HLLHSSILVP 199          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.376e-46
Identity = 105/211 (49.76%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW AQ TMFWALFVLGHDCGHGS SND K N+  G      S+LVP
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVG-HILHSSILVP 195          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.282e-40
Identity = 96/209 (45.93%), Postives = 109/209 (52.15%), Query Frame = 3
Query:   60 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            A WVLSECGL+PLP I+ RPR G      N  K R L   KS  +L       S   S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW  QGTMFWALFVLGHDCGHGS SN+ K N+  G      S+LVP
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVG-HLLHSSILVP 205          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.739e-39
Identity = 100/215 (46.51%), Postives = 113/215 (52.56%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            MA+ VLSECG++PLP I+  PR+    N +K R   S  S      PL    G  SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW AQGTMFWALFVLGHDCGHGS SND K N+  G      S+LVP
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVG-HLLHSSILVP 191          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.843e-38
Identity = 89/205 (43.41%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   57 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            MAS VLSECG +PLP  +P+  T    +          L      L    G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW AQGTMFWALFVLGHDCGHGS SND + N+  G      S+LVP
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAG-HLLHSSILVP 184          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.750e-31
Identity = 75/154 (48.70%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  225 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVP 671
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW AQGTMFWALFVLGHDCGHGS SND + N+  G      S+LVP
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVG-HLLHSSILVP 149          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.065e-26
Identity = 65/134 (48.51%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGGASACILSVLVPLLWPGHXXXXXXXXXXXXNVEK*MNSWAP 758
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW AQGTMFWALFVLGHDCGHGS SN  K N+  G    IL  L+ + + G             +VEK   SW P
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGH---ILHSLILVPYNGWRISHRTHHQNHGHVEK-DESWVP 151          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.297e-24
Identity = 51/94 (54.26%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSNDHKWNTCGG 638
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                        PLYWA QGTMFWA+FVLGHDCGHGS S+    N   G
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVG 115          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSN 611
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYWAAQGT+FWA+FVLGHDCGHGS S+
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSD 110          
BLAST of EY736151 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.636e-23
Identity = 49/85 (57.65%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  357 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSLSN 611
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYW AQGT+FWA+FVLGHDCGHGS S+
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSD 107          
The following BLAST results are available for this feature:
BLAST of EY736151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SOYBN4.728e-4749.52Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_SESIN1.376e-4649.76Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_RICCO3.282e-4045.93Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH4.739e-3946.51Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH6.843e-3843.41Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA4.750e-3148.70Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_PHAAU2.065e-2648.51Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC3.297e-2454.26Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH5.624e-2458.82Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.636e-2357.65Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-E09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736151 ID=EY736151; Name=EY736151; organism=Citrus sinensis; type=EST; length=876bp
CACGCGTCCGCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTTCTGA
GACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTCTGCC
TCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCCAGGT
TTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAA
TGTTCGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGC
TCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCA
ACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGA
TCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAG
AGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGA
GCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCT
GCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCAGGG
AACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAA
GCTTGTCAAATGATCACAAGTGGAATACTTGTGGTGGGGCGTCTGCCTGC
ATCCTCTCCGTCCTGGTTCCCTTATTATGGCCTGGCCACTGAACCACAGG
AACTCGGTCCATCAGGACGAGGCGGAATGTTGAAAAATGAATGAATTCTT
GGGCACCCTCGGTCTTAGCACAGTCGAAAGGACCTTGGCCACCGTCACGA
CAAATTCTGCTAACTTGACAACACCGGTCGCCCGCGGGCGACGTTTGCCT
TTGCAGTCTCCGTAGGGCCGAAGTAG
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