EY736057

Overview
NameEY736057
Unique NameEY736057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY736057_ssr468 microsatellite EY736057_ssr468:468..479. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 5.582e-70
Identity = 139/234 (59.40%), Postives = 178/234 (76.07%), Query Frame = 1
Query:  127 MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLVPRK*LPVGPPQGAKMSTH-LSVGVADHG 810
            MA+H+ALA +RIP  TR PSKT+HSFP+QC++KRL+V EF+GL++ +  +Y   ARD+SF+D V AQLT K A GS  VK  TVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVNDSGGV+NASHL+KYDS+LGTFKA+VKI+++ET++VDGK IKVVS+R P   P AELGIDI I+GTG+       G+ +   A+  ++        P +GA + T+ + V   D+G
Sbjct:    1 MATHAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYDVVAAQLTSK-ANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII------TAPAKGADIPTYVIGVNEQDYG 227          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.796e-68
Identity = 142/235 (60.43%), Postives = 173/235 (73.62%), Query Frame = 1
Query:  127 MASHSALAPSRIPAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLVPRK*LPVGPPQGAKMSTH-LSVGVADHG 810
            MA+H+ALA SRIP   R+ SK+  HSFP QCS+KRL+VAEF+GLR ++         +ASFFDAV AQ+ PK    S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVV+NDSGGV+NASHL+KYDS+LGTFKA+VKIVD+ET+SVDGKLIKVVSNR P   P AELGIDI I+GTG+       G+ +   A   ++        P +GA + T+ + V   D+G
Sbjct:    1 MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLRMSSIGG------EASFFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVII------TAPAKGADIPTYVMGVNEQDYG 223          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.345e-68
Identity = 142/236 (60.17%), Postives = 176/236 (74.58%), Query Frame = 1
Query:  127 MASHSALAPSRIPAITRIPSKTT--HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLVPRK*LPVGPPQGAKMSTH-LSVGVADHG 810
            MASH+ALAPSRIPA TR+ SK +  +SF TQCS KRLDVA+F+GLR++   T+    R+ASF D + AQLT K   G+ PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGV++A+HL+KYDS+LGTFKADVKI+D+ET S+DGK IKVVSNR P   P AELGIDI I+GTG+       G+ +   A+  ++        P +G+ + T+ + V   D+G
Sbjct:    1 MASHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REASFHDVIAAQLTTK-PTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII------TAPAKGSDIPTYVVGVNEKDYG 226          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.990e-59
Identity = 125/200 (62.50%), Postives = 153/200 (76.50%), Query Frame = 1
Query:  214 CSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLVPRK*LPVGPPQGAKMSTHLSVGV 798
            C +K+ +VAEFAGLR++   T++   +++SFFD V+AQLTPK    S PVK ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGV+NASHL+KYDS+LGTFKADVKIVD+ET+SVDGK IKVVS+R P   P AELGIDI I+GTG+       G+ +   A+  ++        P +GA + T++ VGV
Sbjct:    1 CLSKKFEVAEFAGLRSSGCVTFSN--KESSFFDVVSAQLTPKTTR-STPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII------TAPAKGADIPTYV-VGV 190          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.747e-40
Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  235 VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            ++EF+GLR++A       A    F  AV+ + T  V     P +  T AKLKVAINGFGRIGRNFLRCWHGR D SPLDV+ +ND+GGV+ ASHL+KYDS LG F ADVK V    +SVDGK+IKVVS+R P   P  ELGID+ I+GTG+
Sbjct:   19 LSEFSGLRSSASLPMRRNATSDDFMSAVSFR-THAVGTSGGPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGV 168          

HSP 2 Score: 23.8682 bits (50), Expect = 1.747e-40
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            AG  I AGAKKV+   P  G
Sbjct:  175 AGKHIQAGAKKVLITAPGKG 194          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.451e-39
Identity = 82/148 (55.41%), Postives = 104/148 (70.27%), Query Frame = 1
Query:  241 EFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            EF+GLR+++ +        +  F ++ +  T  + +     K  T AKLKVAINGFGRIGRNFLRCWHGRKDSPLD++ +ND+GGV+ ASHL+KYDS LG F ADVK      +SVDGK+I+VVSNR P   P  ELGIDI I+GTG+
Sbjct:   14 EFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGV 161          

HSP 2 Score: 24.6386 bits (52), Expect = 1.451e-39
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            AG  I AGAKKVI   P  G
Sbjct:  168 AGKHIEAGAKKVIITAPGKG 187          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.044e-38
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1
Query:  238 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            +EF+GLR ++   +     D     +V A  T  +  G+   K+  V AKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGV+ ASHL+KYDS LG F ADVK V  + +SVDGK+I+VVS+R P   P  +LGID+ I+GTG+
Sbjct:   12 SEFSGLRTSSAIPFGRKTNDDLL--SVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGV 157          

HSP 2 Score: 23.8682 bits (50), Expect = 2.044e-38
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  705 AGSAIHAGAKKVITRGPPTG 764
            AG  I AGAKKV+   P  G
Sbjct:  164 AGKHIQAGAKKVLITAPGKG 183          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.635e-38
Identity = 89/169 (52.66%), Postives = 111/169 (65.68%), Query Frame = 1
Query:  238 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLV 729
            +EF+GL  ++      G+ D   F  V+ Q T  V            AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGV+ ASHL+KYDS+LGTF ADVK      +SVDGK+IKVVS+R P   P  ++GID+ I+GTG+       G+ L   A+  L+
Sbjct:   21 SEFSGLHTSSLPFGRKGSDDLMAF--VSFQ-TNAVGGKRSSQNGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 186          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.611e-38
Identity = 88/170 (51.76%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  238 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAK-LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL-----SGGRPLWREARSTLV 729
            +EF+GLR ++     +      F   VT Q     ++G         AK LKVAINGFGRIGRNFLRCWHGRKDSPLDV+ +ND+GGV+ ASHL+KYDS LG F ADVK V  + +SVDGK+IKVVS+R P   P  ELGID+ I+GTG+       GR +   A+  L+
Sbjct:   21 SEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLI 190          
BLAST of EY736057 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.946e-35
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1
Query:  337 KVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVENASHLVKYDSLLGTFKADVKIVDHETLSVDGKLIKVVSNRGPPPPPGAELGIDIPIQGTGL 684
            K A   V V+ E   K++VAINGFGRIGRNFLRCWHGR+++ LDVV +NDSGGV+ ASHL+KYDS LGTF ADVKIVD   +SVDGK IK+VS+R P   P  E+ ID+ I+GTG+
Sbjct:   24 KAARAVVDVRAEK--KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGV 137          
The following BLAST results are available for this feature:
BLAST of EY736057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
G3PB_PEA5.582e-7059.40Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH1.796e-6860.43Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL2.345e-6860.17Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC1.990e-5962.50Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE1.747e-4057.62Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.451e-3955.41Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC2.044e-3856.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL5.635e-3852.66Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA9.611e-3851.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE9.946e-3563.79Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-009-E02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736057 ID=EY736057; Name=EY736057; organism=Citrus sinensis; type=EST; length=920bp
CCGCCGCCCCCGCAACGCGGTAACCTTGCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCACGCCGTCGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCA
GCAAATCAGCAACTAAGCCACAGGGCATGGCCAGTCACTCAGCTCTTGCT
CCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCAAGACTACTCACTC
TTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTG
GCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGGTGCTAGAGATGCA
TCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCAGCAGG
ATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTGAAGGTGGCAATTA
ATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATGCTGGCACGGCAGG
AAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACAGTGGTGGTGTCGA
GAATGCTTCACACCTTGTAAAATATGACTCATTGCTTGGAACTTTTAAAG
CAGACGTGAAAATAGTGGACCACGAGACCCTCTCTGTCGATGGTAAGCTC
ATCAAGGTTGTCTCTAACAGGGGACCTCCCCCCCCCCCTGGGGCTGAGCT
CGGAATTGACATCCCTATTCAGGGAACCGGACTCTCCGGTGGACGGCCCC
TGTGGCGGGAAGCGCGATCCACGCTGGTGCCAAGAAAGTAATTACCCGTG
GGCCCCCCACAGGGGGCGAAAATGTCCACCCATCTGTCGGTGGGGGTCGC
CGACCACGGTCCCCGAGCCCCACGTTCCCCCCATTGCTCCGCACCCCTCC
CCGCCCCACCCGCGGGGCCGCCGCCCCCCGCCACCGTCCCCACCCCCAAA
CTCTGGGTGGTGCTCGGACC
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