EY735940

Overview
NameEY735940
Unique NameEY735940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735940 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.605e-65
Identity = 131/240 (54.58%), Postives = 157/240 (65.42%), Query Frame = 2
Query:   11 APVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQPSR------------------GSTPV-------AETQACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQGITNRLR 655
            AP+++ AM IVE+SGGQYHVLVIIADGQVTRSV+T +G+LS QEQKT+ +IV AS  PLSIVLVGVGDGPW+ M++FDD IPAR FDNFQFVNFT IM+KN   S KET FAL+ALMEIP QYKA +EL ++GR  G                      +PSR                   S+PV       ++ Q CPICL+N KD+AFGCGH TC ECG  +  CPICR  I  R++
Sbjct:  227 APIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIK 466          
BLAST of EY735940 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.880e-64
Identity = 127/227 (55.95%), Postives = 150/227 (66.08%), Query Frame = 2
Query:   11 APVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQP------------SRGSTPVAETQACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQGITNRLR 655
            AP++E AM +VE+S GQYHVLVIIADGQVTRSV+T  G LS QEQKT+ +IV AS+ PLSIVLVGVGDGPW+ MQ+FDD IPAR FDNFQFVNFT IMSKN   S KET FAL+ALMEIP QYKA +EL ++G   G                     R P            S+  +   + Q CPICL+N K++AFGCGH TC ECG  +  CPICR  I  R++
Sbjct:  261 APIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIK 487          
BLAST of EY735940 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.545e-25
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 2
Query:    2 TRPAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 406
            T   P+++ A++I  K    YH+LVI+ADGQVT             E+   K+I AAS YPLSI++VGVGDGPW  M +FDD IP R FDNF FV+F  +M         + +FAL ALMEIP QYKA  ELG++
Sbjct: 7424 TNFVPLIDRAIEIC-KEKHSYHILVIVADGQVTN------------EKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of EY735940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.605e-6554.58E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.880e-6455.95E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.545e-2548.89Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735940 ID=EY735940; Name=EY735940; organism=Citrus sinensis; type=EST; length=810bp
CACGCGTCCGGCTCCGGTGGTTGAGGCTGCAATGGACATTGTGGAGAAGA
GTGGAGGCCAGTATCATGTTTTGGTTATCATTGCAGATGGCCAGGTTACA
AGGAGTGTCAATACAGGTGATGGAGAACTGAGTTCACAAGAACAGAAAAC
AATAAAGTCAATTGTTGCTGCAAGTTCATATCCACTTTCCATTGTGCTTG
TTGGAGTCGGTGATGGACCTTGGGAAGACATGCAGAAATTTGATGACAAG
ATCCCTGCACGTGAATTTGATAATTTTCAGTTTGTTAATTTTACCGCCAT
TATGTCAAAAAATGCAACTCCATCTGAGAAAGAAACAGCTTTTGCTCTTG
CCGCTCTCATGGAGATACCTATTCAATACAAAGCTGCAGTAGAACTTGGT
ATTATGGGACGCACGACAGGGAGAGCAAAGAAAATAGCTCCACGACCTCC
TCCAGCTCCTTATTCTCGCCGTGCCCTGCCAGAACGTCAACCAAGCCGTG
GTTCAACCCCTGTTGCGGAAACCCAGGCTTGCCCAATTTGCCTGACCAAT
GCAAAGGACTTGGCCTTTGGCTGTGGGCACATGACTTGTCGTGAATGTGG
ATCAAGAGTGTCCAACTGCCCTATATGCCGCCAAGGGATCACGAACCGTC
TCAGGGCTGTTGCTTGATGGCTGGTCGGCACGAAGATCAAATACGGATGG
TTTACGACTGCCTCTGCGTGTGCCAACGGATAAACTCGCCCAAACCGCGC
CGCAAGAGCCATGTTCACCAGGCGGAGCTCTTGTATGAGATCCTTGAGCG
TGCGTGACGG
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