EY735939

Overview
NameEY735939
Unique NameEY735939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12328 contig Csv1_Contig12328:1..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735939 vs. ExPASy Swiss-Prot
Match: TCP4_ARATH (Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.802e-26
Identity = 94/285 (32.98%), Postives = 138/285 (48.42%), Query Frame = 2
Query:   11 QEGKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAI-------QEQSESSGYSFQIHRQLG--DHNANNDSTFMSPPPLDTDAIADTIKSFFPT--STTASAIN---FQNY----PAGILTRSANPTEDLGLSLHTAFQD--PGLIHGQSRGDTSHTTSADQTPFAGSAPVGFDSS-----------FQRMLAWNN--ETSAETRGTGG-----------XXXXXXXXXXXXXXXXRGPLQSSFTQSVRAWDDIPXGKTHEIQQSSVFGMPAGCNIPTPIH 733
            ++ K+SID+LAELPPW P+ +   AA  A+P   +++  I       Q+Q +     F +    G  +H +NN+S+F+ PP +D+D+IADTIKSFFP   S+T +  N     NY    P  +L+R+ +  +DL LSL  +F D  P L+H Q    TS + S     +  S P+GFD+S            QR++AWN+     A   G GG                           RGPLQSS++  +RAW D      H  Q  S   +    ++P P+H
Sbjct:   94 KKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQLQFGVGFNGGGAEHPSNNESSFL-PPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLMHNYHHQHPPDLLSRTNSQNQDLRLSLQ-SFPDGPPSLLHHQHHHHTSASASEPTLFYGQSNPLGFDTSSWEQQSSEFGRIQRLVAWNSGGGGGATDTGNGGGFLFAPPTPSTTSFQPVLGQSQQLYSQRGPLQSSYSPMIRAWFD----PHHHHQSISTDDLNHHHHLPPPVH 372          
BLAST of EY735939 vs. ExPASy Swiss-Prot
Match: PCF5_ORYSJ (Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.058e-18
Identity = 87/302 (28.81%), Postives = 118/302 (39.07%), Query Frame = 2
Query:   11 QEGKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQI-HRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFP----------TSTTA---SAINFQNYPAGILTRSANPTEDLGLSLHTAFQDPGLIHGQSR---GDTSHTTSADQTPFAGSAPVGF----------DSSFQRMLAWNNETSAETRGTGG---------------XXXXXXXXXXXXXXXXRGPLQSSFTQSVRAWDDI----------PXGKTHEIQQSSVFGMP----AGCNIPTPIHGQNHH 748
            +  K +IDKL  LP WQP+     A   A P   S+     E S+    +  + H         +  T   PP LD+DAIADTIKSFFP          +STTA   SA+ FQ+Y   +L+R+ + +++L LSL  +  DP   H Q R   G      +  Q  F+G+A   F           +  QRML WN     +  G GG                               RGPLQSS   S R W +             G +  +  +  F  P    +G  +P  I G   H
Sbjct:  138 KNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAENSDDQAQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEASSSTTAAQSSAMGFQSYTPDLLSRTGSQSQELRLSLQ-SLPDPMFHHQQHRHGGGGGGGNGTTQQALFSGAANYSFGGGAMWATEQQAQNQRMLPWN---VPDPGGGGGAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQRGPLQSSNQPSERGWPETVEADNQMSHHQGGLSPSVSAAIGFAAPGIGFSGFRLPARIQGDEEH 435          
BLAST of EY735939 vs. ExPASy Swiss-Prot
Match: PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.058e-18
Identity = 87/302 (28.81%), Postives = 118/302 (39.07%), Query Frame = 2
Query:   11 QEGKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQI-HRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFP----------TSTTA---SAINFQNYPAGILTRSANPTEDLGLSLHTAFQDPGLIHGQSR---GDTSHTTSADQTPFAGSAPVGF----------DSSFQRMLAWNNETSAETRGTGG---------------XXXXXXXXXXXXXXXXRGPLQSSFTQSVRAWDDI----------PXGKTHEIQQSSVFGMP----AGCNIPTPIHGQNHH 748
            +  K +IDKL  LP WQP+     A   A P   S+     E S+    +  + H         +  T   PP LD+DAIADTIKSFFP          +STTA   SA+ FQ+Y   +L+R+ + +++L LSL  +  DP   H Q R   G      +  Q  F+G+A   F           +  QRML WN     +  G GG                               RGPLQSS   S R W +             G +  +  +  F  P    +G  +P  I G   H
Sbjct:  262 KNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAENSDDQAQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEASSSTTAAQSSAMGFQSYTPDLLSRTGSQSQELRLSLQ-SLPDPMFHHQQHRHGGGGGGGNGTTQQALFSGAANYSFGGGAMWATEQQAQNQRMLPWN---VPDPGGGGGAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQRGPLQSSNQPSERGWPETVEADNQMSHHQGGLSPSVSAAIGFAAPGIGFSGFRLPARIQGDEEH 559          
BLAST of EY735939 vs. ExPASy Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 79/243 (32.51%), Postives = 115/243 (47.33%), Query Frame = 2
Query:   14 EGKSSIDKLAELPPWQPS-TSNNNAATEAEPNMGSSEMAIQE---QSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSANPTEDLGLSLHTAFQ---------DPGLIHGQSRGDTSHTTSADQTPFAGSAPVGFDSSFQRMLAWNNETSAETRG-TGG-----XXXXXXXXXXXXXXXXRGPLQSSFTQSVRAWDDIPXGKTHEIQQS 685
            + KS+ID LA+LPPW P+ T   +AA  A      ++  I     Q E +      H ++G+   +N+S+F+ P  +D+D+IADTIKSFFP ++T  + + Q    G    +    + L LSL  +FQ         +P L  GQS    +  +S      +  +P       QR+++WNN  +AE+ G TGG                     RGPLQS  T  +RAW D P    H  QQS
Sbjct:   99 KAKSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETE-----HHRIGEEE-DNESSFL-PASMDSDSIADTIKSFFPVASTQQSYHHQPPSRG----NTQNQDLLRLSLQ-SFQNGPPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPE--FGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRGPLQSINTPMIRAWFD-PHHHHHHHQQS 326          
The following BLAST results are available for this feature:
BLAST of EY735939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TCP4_ARATH7.802e-2632.98Transcription factor TCP4 OS=Arabidopsis thaliana ... [more]
PCF5_ORYSJ2.058e-1828.81Transcription factor PCF5 OS=Oryza sativa subsp. j... [more]
PCF5_ORYSI2.058e-1828.81Transcription factor PCF5 OS=Oryza sativa subsp. i... [more]
TCP3_ARATH8.647e-1732.51Transcription factor TCP3 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735939 ID=EY735939; Name=EY735939; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGCAAGAAGGCAAATCTTCCATTGACAAGCTCGCTGAGCTAC
CCCCATGGCAACCGAGTACTAGTAACAACAATGCTGCCACGGAAGCTGAG
CCTAATATGGGTTCAAGTGAGATGGCGATACAAGAGCAATCGGAGTCATC
TGGTTACAGCTTCCAGATCCATAGGCAATTGGGTGATCATAACGCAAATA
ATGATTCCACTTTCATGTCGCCGCCGCCTTTGGACACTGATGCTATAGCT
GATACCATAAAATCATTCTTCCCAACAAGCACGACGGCTTCAGCAATCAA
CTTTCAGAACTATCCAGCTGGTATACTCACAAGATCTGCAAACCCAACAG
AAGATCTCGGGCTATCGCTTCACACAGCTTTCCAGGACCCTGGCCTAATC
CATGGCCAGTCAAGGGGAGACACAAGTCACACAACTTCAGCAGATCAAAC
CCCTTTCGCAGGCTCAGCTCCTGTAGGTTTTGACTCCAGTTTCCAGCGAA
TGTTAGCCTGGAATAATGAAACAAGCGCAGAAACGAGAGGGACTGGTGGG
TTTTTATTCAACTCATCATCGTTGTCACAACAAGCAGCATTGGCATTTAG
GGGACCCCTTCAGTCCAGTTTCACGCAATCAGTTAGAGCCTGGGATGATA
TTCCANTTGGGAAAACACATGAGATTCAACAGTCTAGTGTCTTTGGGATG
CCGGCTGGGTGTAACATTCCAACTCCAATCCATGGCCAAAATCATCACCA
GCACCGTGACAGGCCCTCCTCTTCTTCTCCCCATAATTCTCCACCGCTGA
TAAACTTCACTTACCAAGGTATAATCATGAGTATCTTGCAGGTGCTGTAG
TTGCGTCGTCCAAGACGGATGG
back to top