EY735938

Overview
NameEY735938
Unique NameEY735938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735938_ssr670 microsatellite EY735938_ssr670:670..681. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6951 contig Csv1_Contig6951:6..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735938 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.590e-16
Identity = 49/144 (34.03%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  353 ELKAICQDD---MTMDYEERYIHGKPH-NSFHKAVNI-PDIIVFPRSEDEVSKIVKCCDKDQVPIITYGGATSIEGHSLSPTGGVCIDMSV---MNSVRASHIEDMDVVVEPGIGWMELDDYLGAYGSI--CPAG----CRGCV 742
            ELK + ++D    T+  ++   H   + NS H   N  P+I+++PR+ ++VSK++K C K  +P+I + G TS+EGH L    G C+ + +   +N +   + ED+DVVV+ G+ W EL++YL  +G +  C  G      GC+
Sbjct:  106 ELKDVLENDPENFTVAKDDLDAHSDTYFNSHHAEANQRPEIVLYPRNTEDVSKLLKICHKYSIPVIPFSGGTSLEGHFLPTRPGSCVVLDISKYLNKIIQLNKEDLDVVVQGGVPWEELNEYLNDHGLLFGCDPGPGAQIAGCI 249          
BLAST of EY735938 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.260e-13
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  317 GSHNEIPQELVDELKAIC-QDDMTMDYEERYIHGKPHNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKDQVPIITYGGATSIEGHSLSPTGGVCIDMSVMNSVRASHIEDMDVVVEPGIGWMELDDYL-----------GAYGSICPAGCRG 736
            GS   + Q+ V+ LKA+     ++     R  HG  H+        PD +V+P++ D+VS++   C    VPII +G  T +EG   +  GGVCI+++ M+ +   + ED  VVVEPG+    L+ +L           GA  S+C     G
Sbjct:   22 GSQGGLSQDFVEALKAVVGSPHVSTASAVREQHG--HDESMHRCQPPDAVVWPQNVDQVSRVASLCYNQGVPIIPFGTGTGVEGGVCAVQGGVCINLTHMDQITELNTEDFSVVVEPGVTRKALNTHLRDSGLWFPVDPGADASLCGMAATG 171          
BLAST of EY735938 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.819e-12
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  452 PDIIVFPRSEDEVSKIVKCCDKDQVPIITYGGATSIEGHSLSPTGG--VCIDMS-VMNSVRASHIEDMDVVVEPGIGWMELDDYLGAYG 709
            P II+FP + +EVSKI+K C  + +P++ + G TS+EGH L    G  + +D+S  MN+V      D+D+ V+ G+ W +L+DYL  +G
Sbjct:  151 PRIILFPHTTEEVSKILKICHDNNMPVVPFSGGTSLEGHFLPTRIGDTITVDLSKFMNNVVKFDKLDLDITVQAGLPWEDLNDYLSDHG 239          
BLAST of EY735938 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  305 YVVNGSHNEIPQELVDELKAICQDD-MTMDYEERYIHGKPHNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKDQVPIITYGGATSIEGHSLSPTGGVCIDMSVMNSVRASHIEDMDVVVEPGIGWMELDDYL-----------GAYGSICPAGCRG 736
            Y    +  E+ ++ V+ LKA+     ++     R  HG+   S H+    PD +V+P++ ++VS++   C +  VPII +G  T +EG   +  GGVC++++ M+ +   + ED  VVVEPG+    L+ +L           GA  S+C     G
Sbjct:   18 YCSQKAKGELCRDFVEALKAVVGGSHVSTAAVVREQHGRDE-SVHRC-EPPDAVVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQEDFSVVVEPGVTRKALNAHLRDSGLWFPVDPGADASLCGMAATG 171          
The following BLAST results are available for this feature:
BLAST of EY735938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DLD1_KLULA1.590e-1634.03D-lactate dehydrogenase [cytochrome], mitochondria... [more]
LDHD_MOUSE1.260e-1331.58Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_YEAST1.819e-1240.45D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
LDHD_HUMAN2.011e-1129.49Probable D-lactate dehydrogenase, mitochondrial OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735938 ID=EY735938; Name=EY735938; organism=Citrus sinensis; type=EST; length=776bp
CCACGCGTCCGTTCCTTTTGGCTCGCTCGTTTACGATCATCATCAAAATC
CATCCTCAGCAGTCTCCGCACTTCAAAGTTCAGTACTGCAGAACACACGT
ACAAGAACTCTTATCACATTATCCAGCGACAACAGCTCGAGAAATGGAAC
CCCGTTTCAGCTGTTTTCAGCCTCTCTTCTTCCTTTAGCACTCGCTGCCT
CTGCTGGGTCCCTCGCCATGCAATCCCAGACGCACCCTTCTCTCTGCGAC
TCCTCAGCTCTTGATTCTCGGGATGTGAACATTGGTGGTAAAGGAAGTAC
GGAGTATGTGGTGAATGGGTCACACAATGAAATTCCGCAGGAGCTTGTTG
ATGAACTCAAGGCTATTTGTCAAGATGATATGACAATGGATTATGAAGAG
AGGTACATCCATGGAAAACCACACAACAGCTTTCACAAAGCAGTCAATAT
CCCCGATATCATTGTGTTCCCCAGGTCTGAAGATGAAGTCTCCAAGATTG
TCAAGTGTTGTGATAAAGATCAGGTCCCTATAATCACATATGGTGGGGCT
ACGTCGATCGAGGGTCACAGCTTATCTCCTACTGGAGGTGTCTGCATTGA
CATGTCTGTGATGAATAGTGTTAGAGCATCGCATATTGAGGACATGGATG
TGGTTGTTGAGCCTGGGATTGGATGGATGGAGCTTGATGACTACTTGGGA
GCCTATGGGTCGATCTGCCCTGCGGGATGCCGCGGCTGCGTGCGAGCAGG
GGGGTATGTGTGCGAAGCGGGGTGGN
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