EY735925

Overview
NameEY735925
Unique NameEY735925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735925_ssr752 microsatellite EY735925_ssr752:752..763. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:85..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 3.415e-87
Identity = 171/209 (81.82%), Postives = 189/209 (90.43%), Query Frame = 3
Query:  210 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LV +LEK A P++G DDIKAVATISAGND+LIG MIA++  +VGPD VLSIESS+SFE  VE+EEGMEI  G ISP + T
Sbjct:   43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGMEIDRGYISPQFVT 251          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 3.775e-86
Identity = 169/209 (80.86%), Postives = 188/209 (89.95%), Query Frame = 3
Query:  210 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+ +L+K A P++GRDDI+AVA+ISAGNDDLIG+MIA +  +VGPD VLSIESSSSFE  VE+EEGMEI  G ISP + T
Sbjct:   42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVT 250          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 1.098e-85
Identity = 170/209 (81.34%), Postives = 186/209 (89.00%), Query Frame = 3
Query:  210 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+ +LEK A P++G  DIKAVATISAGND+L+GTMIA +  +VGPD VLSIESSSSFE  VE+EEGMEI  G ISP + T
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVT 210          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.290e-83
Identity = 167/209 (79.90%), Postives = 183/209 (87.56%), Query Frame = 3
Query:  210 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+ +LEK + P++G  DIKAVATISAGND+LIG MIA +  +VGPD V  IESSSSFE  VE+EEGMEI  G ISP + T
Sbjct:   41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSSFETTVEVEEGMEIDRGYISPQFVT 249          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.532e-82
Identity = 160/205 (78.05%), Postives = 185/205 (90.24%), Query Frame = 3
Query:  222 ASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            A AK+IAFDQ+SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+ +LE+ A P++G  DIKAVA+ISAGND+LIG MIA +  +VGPD VLSIESSSSFE  V++EEGMEI  G ISP + T
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVT 206          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.257e-81
Identity = 161/193 (83.42%), Postives = 176/193 (91.19%), Query Frame = 3
Query:  258 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+ +LEK A P++GRDDIKAVA+ISAGND+LIGTMIA +  +VGPD VLSIESSSSFE  VE+EEGMEI  G ISP + T
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVT 193          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.744e-67
Identity = 135/206 (65.53%), Postives = 170/206 (82.52%), Query Frame = 3
Query:  222 ASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            A AK+I FDQ SR  +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV KL++ A P++GRDDIK VA+ISAGND+ IG MIA +  +VG + VLSIE+S+S E  VE++EGMEI  G ISP + T
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSNSTETVVEVQEGMEIDRGYISPQFVT 239          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.159e-57
Identity = 115/204 (56.37%), Postives = 158/204 (77.45%), Query Frame = 3
Query:  228 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV ++E  + P+ G D I  VATISAGND  +G MIAQ+  +VG D V+++E S S    +E+ EGM+I  G ISP + T
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVT 204          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.185e-55
Identity = 111/204 (54.41%), Postives = 157/204 (76.96%), Query Frame = 3
Query:  228 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            AK I F + +R A++ GI++L+DA+ +T+GP+GRNVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LV ++   A P+EGR  I  VATISAGND  +G MIA++   VG D V+++E S S E  +++ EGM+   G ISP + T
Sbjct:    2 AKRILFREEARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYISPYFVT 205          
BLAST of EY735925 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.185e-55
Identity = 111/204 (54.41%), Postives = 158/204 (77.45%), Query Frame = 3
Query:  228 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVXKLEKXAXPIEGRDDIKAVATISAGNDDLIGTMIAQST*QVGPDCVLSIESSSSFENNVELEEGMEI-TGVISPIWPT 833
            AK I F + +R A++ GI++L+DAV +T+GP+GRNV+L++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVA+KTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LV ++   A P+EGR +I  VATISAGND  +G MIA++   VG D V+++E S S E  +E+ EGM+   G ISP + T
Sbjct:    2 AKQILFREEARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEESKSLETQLEVVEGMQFDRGYISPYFVT 205          
The following BLAST results are available for this feature:
BLAST of EY735925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA3.415e-8781.82RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH3.775e-8680.86RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA1.098e-8581.34RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA2.290e-8379.90RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT2.532e-8278.05RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO1.257e-8183.42RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE8.744e-6765.53RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM12.159e-5756.3760 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_SYNJB1.185e-5554.4160 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_SYNJA1.185e-5554.4160 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-G08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735925 ID=EY735925; Name=EY735925; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGGTCCTCTCGCAGCTTCTACTTGTTGGTACCTTATCCGAA
ACAATTTCCCTCAGCAGACCCTTTACTCCGTTTGGTTGATTGTTCGAAAT
GGCTTCTGCTAACGCCCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAAC
AGGGGAGCTTGAGGAGGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAAT
TACAGGAGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCA
GAGGTCCAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGCTG
TTGGCCTTACTCTTGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTT
GGGAGTCCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATTGA
GCTCGCAGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTG
CAAGCAAAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAGTT
CTTGCACGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGC
AAATCCTGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTTGG
TANAAAAGTTGGAAAAAANGGCCANGCCTATCGAAGGTCGTGATGATATC
AAAGCTGTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACAAT
GATCGCCCAATCCACTTGACAAGTTGGTCCTGATTGCGTCTTGTCCATCG
AATCATCATCATCATTTGAAAATAATGTTGAACTTGAGGAAGGAATGGAA
ATTACGGGGGTAATCTCTCCCATTTGGCCAACCCTGAGAATTCTTGGCGA
CTG
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