EY735712

Overview
NameEY735712
Unique NameEY735712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12305 contig Csv1_Contig12305:1..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735712 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.228e-17
Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 3
Query:  225 RKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNA-SIAAAADQSNGRTNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKD 707
            R SD  C++++ +K+  N   +DE    SKQA + ER   + A ++    DQSNG ++I + +G    + +P     E  LEL+ ++   P  E G    + + TNG+  E    +  + E     K+EREEGELSPNGDFEEDNFAVY ++  E   KA D
Sbjct:  796 RTSDALCETAQHEKMLKNVVTSDEKPE-SKQAVSIERAHDSTALAVDGLLDQSNGGSSIVHMTGHCNNNLKPVTCGTE--LELKMNDGNGPKLEVGN---KKLLTNGIAVE----ITSDQEMAGTSKVEREEGELSPNGDFEEDNFAVYAKTDFETFSKAND 947          
The following BLAST results are available for this feature:
BLAST of EY735712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH6.228e-1737.65Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-A07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735712 ID=EY735712; Name=EY735712; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGAGTCATACTGTCAAAAGTCGTGCTGCTAGTGTTGGAGAT
AGCGATGGCAGTCCTGATGGTGGTGCTGCTGCCATGACTTCCAAACATTC
AAATCCTTCCCGAAATGGAGATGAAAGTATTCCTCCTGAGCAGTCAAGTT
CTTCTAGGGCATGGTTGCCAAATGGAGATCATGGAATAAAAGAAGACGTT
TCTGTGGAGGCAGACCATAACGCTCGTAAGAGTGATAATTTCTGTGATAG
TTCTGAGCAAGACAAAGTGCAGAATAATGCAGCTATGGCTGATGAGACTT
CGGGGATCAGCAAACAGGCTAGTACCAATGAACGATTGATCGGTACAAAT
GCTTCAATTGCTGCTGCAGCAGATCAAAGCAATGGAAGAACTAACATAGA
AAACACTTCAGGGCTTAGTGTGGCACATTCTAGACCTGGTAATCACATTG
TTGAGGGTGGGCTTGAGTTGAGGTCCAGTAATGAAATTCTACCTTCTTCA
GAGGGTGGAGAGTGCTCGAGGCAGAATATATCCACAAATGGGGTGATGAC
AGAAGGAGCCAAGATTCTCAGATATAATGCAGAGTCTGTCAAGCAATTCA
AAATTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTCGAGGAG
GATAATTTTGCAGTTTATGGAGAATCTGGTTTGGAGGCTGTGCATAAAGC
AAAGGATGGTGCTGTTAGCAGACAATATCAAACCAGACATGGAGAAGAAG
TATGCTGTGGGGAGGCTGGTGGANAAAATGAGGCTGATGCTGATGATGAA
GGTGAGGANAGCGCTCACAGGTCTTCAAAGGACACCG
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