EY735548

Overview
NameEY735548
Unique NameEY735548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735548_ssr362 microsatellite EY735548_ssr362:362..373. BLAST: Citrus ESTs to Prunus persica proteins V1
EY735548_ssr381 microsatellite EY735548_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.191e-65
Identity = 130/224 (58.04%), Postives = 151/224 (67.41%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM  IVDDLVS D+LIE+ LT +P NEYIQSCDIVAFNKI
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 5.795e-63
Identity = 127/224 (56.70%), Postives = 146/224 (65.18%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+ IVDDLVSVDSLIEEHLT +P NE++QSCDIVAFNKI
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.589e-36
Identity = 71/87 (81.61%), Postives = 80/87 (91.95%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM  IVDDLVS+D++IEE LT +P NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 70/87 (80.46%), Postives = 81/87 (93.10%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+  IVDDLVS+D++IEE LT +P NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+ IVDDLVSVD+LIE+HLT +P NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          

HSP 2 Score: 120.168 bits (300), Expect = 1.491e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVR 318
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+ IVDDLVSVD L+E++LT +P NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          

HSP 2 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRL 282
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALL 65          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.757e-35
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+ IVDDLVSVDSLIE++   +P NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+ IVDDLVSVDSLIE++   +P NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          

HSP 2 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS 291
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.537e-34
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+ IVDDLVSVD+LIE++LT +P NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of EY735548 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.429e-31
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 1
Query:  499 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMIXIVDDLVSVDSLIEEHLTXDPCNEYIQSCDIVAFNKI 759
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+ I+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          

HSP 2 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 45/76 (59.21%), Postives = 64/76 (84.21%), Query Frame = 1
Query:   88 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 315
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of EY735548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B2_ARATH6.191e-6558.04Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ5.795e-6356.70Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH1.589e-3681.61Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH2.075e-3680.46Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH2.711e-3686.21Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR1.345e-3582.76Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ1.757e-3583.91Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ5.112e-3582.76Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU2.537e-3482.76Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT3.429e-3177.01Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735548 ID=EY735548; Name=EY735548; organism=Citrus sinensis; type=EST; length=845bp
CACGCGTCCGCCCACGCGTCCGGAAGCGATTATCCTGTGTTGAAGTTGTG
CGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAATGGCCATCACTT
TTTCGGATCTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTT
TCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAA
GGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCA
GCAGCTGGTACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGC
AAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCGC
CGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATC
TCTTTGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAG
GCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGT
ACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAG
AAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCA
AAATTGGTCCCAGTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTAN
CATCGTTGACGATCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCA
CANCTGACCCCTGCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTC
AATAAAATTTAAGAATCCTCTCATTGGTTTGCCTTATAGTGCAGCCATTT
TGGGCTGGCAATTAATTTTTGGCGTGTTAATTGTGGTCTGCTTTT
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