EY735546

Overview
NameEY735546
Unique NameEY735546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12292 contig Csv1_Contig12292:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735546 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   16 SRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI 432
            +R+++ +   K+  N  TV WADP  + D    ++VK ++V+NL   VT++ L+K F   G++ +V        ++     F+HF ER  A+KA++     +L+G+ +E   AKP  DQK        + +  Q Y       PPH+
Sbjct:  302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439          
BLAST of EY735546 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   16 SRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI 432
            +R+++ +   K+  N  TV WADP  + D    ++VK ++V+NL   VT++ L+K F   G++ +V        ++     F+HF ER  A+KA++     +L+G+ +E   AKP  DQK        + +  Q Y       PPH+
Sbjct:  212 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 349          
BLAST of EY735546 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   16 SRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI 432
            +R+++ +   K+  N  TV WADP  + D    ++VK ++V+NL   VT++ L+K F   G++ +V        ++     F+HF ER  A+KA++     +L+G+ +E   AKP  DQK        + +  Q Y       PPH+
Sbjct:  302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439          
BLAST of EY735546 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   16 SRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 357
            +R+++ +   K+  N  TV WADP    D    ++VK ++V+NL   VT++ L+K F   G++ +V        ++     FVHF +R +A+KA+      E++G+ +E  LAKP
Sbjct:  305 ARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411          
The following BLAST results are available for this feature:
BLAST of EY735546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HNRPQ_HUMAN1.363e-1129.93Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
HNRPQ_RAT1.780e-1129.93Heterogeneous nuclear ribonucleoprotein Q OS=Rattu... [more]
HNRPQ_MOUSE1.780e-1129.93Heterogeneous nuclear ribonucleoprotein Q OS=Mus m... [more]
HNRPR_HUMAN8.834e-1132.17Heterogeneous nuclear ribonucleoprotein R OS=Homo ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735546 ID=EY735546; Name=EY735546; organism=Citrus sinensis; type=EST; length=848bp
CACGCGTCCGGAATATCAAGGCAGAAGATGACTAACCCCAATTTCAAATT
AGGCACTAATGCGCCAACCGTGAGCTGGGCTGACCCTCGAAATGTCGATT
CTTCTGGTGCTTCTCAGGTTAAGGCAGTTTATGTGAAGAATTTACCAAGG
AATGTTACCCAAGACCAGTTAAAGAAGCTCTTTGAGCACCATGGGAGAAT
CACAAAAGTGGTTGTCCCACCAGCAAAGCCTGGACAGGAAAAGAATAGGA
TTGGTTTTGTACATTTTGCAGAGAGGTCTAGTGCCATGAAGGCACTGAAG
AACACTGAAAAATATGAACTTGATGGCCAAGCTTTGGAGTGTTCTCTTGC
AAAGCCACAGGCAGATCAGAAGTCAGCTGGAGGGTCAGTTTCCGAGAAGC
CCAGTTTACTTCAAAATTATCCACCTCATATTGGTTATGGTTTAGCTGGG
GGCACCTATGGTGCTCTAGGTGCAGGGTTTGGAGCTGCAGCCTTTGCCCA
GCCCTTGGTCTATGGAAGAGGAGCAAGTCCTGCTGGCATGGCAATGATGC
CAATGCTTCTACCTGATGGGCGTATTGGATATGTCTTACAACAGTCTGGA
GCTNCACCACACAGCTTGCCTGCACATCATGGGAGTAGTGGTAGAAGTAG
TAGTGGAAGTCGCAACAAAGGAGGCAGTTCAAGCCGGGGGAGGCACNGTG
ATGGTGGCCATGGGCAACGATATCGTCCATACTAGTAGCCTTTTTTAAAA
AGCCTATAATTATATATTGGGAATGTGTCTGCATCCTTTTACTGTTCTCA
TTGTAAAGCCCAAGATTTCAGGCATCTGATTGTGGCAACATCTTATTA
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