EY735289 | Citrus Genome Database

Overview


Name	EY735289
Unique Name	EY735289
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1018

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y2135_PSEFS (UPF0502 protein PFLU_2135 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_2135 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.972e-36
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  307 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            MT EHDT + EPRLNSTEIRILGCLIEKQAT+PETYPLTLNALV+ACNQKTSREPVMNLSQGQVGQ
Sbjct:    1 MTAEHDTDTPEPRLNSTEIRILGCLIEKQATNPETYPLTLNALVLACNQKTSREPVMNLSQGQVGQ 66

HSP 2 Score: 48.521 bits (114), Expect = 4.972e-36
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EG+GFTRLVMG  R +RWEHRVDK L    PA+V      G     GPQT NE
Sbjct:   72 EGQGFTRLVMGS-RADRWEHRVDKAL-ELVPAQVIL---TGLLFLRGPQTVNE 119

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y3711_PSEPF (UPF0502 protein Pfl01_3711 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_3711 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.798e-32
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1

Query:  307 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            MTTE +T S+EPRLN+TEIRILG LIEKQATSPETYPLTLNALV+ACNQKTSREPVMNL+QGQVGQ
Sbjct:    1 MTTEFETRSDEPRLNATEIRILGSLIEKQATSPETYPLTLNALVLACNQKTSREPVMNLTQGQVGQ 66

HSP 2 Score: 42.3578 bits (98), Expect = 1.798e-32
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            E RGF +LVMG  R +RWEH+VDK L    PA++      G     GPQT NE
Sbjct:   72 ESRGFAKLVMGS-RADRWEHKVDKAL-ELVPAQLIL---TGLMFLRGPQTVNE 119

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y2419_PSEU2 (UPF0502 protein Psyr_2419 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2419 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.566e-31
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1

Query:  310 TTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            +TE    +E  +LN TE+RILGCLIEKQAT+PETYPLTLNALV ACNQKTSR+PVMNL+QGQVGQ
Sbjct:    7 STESSPNTEALQLNGTEVRILGCLIEKQATNPETYPLTLNALVTACNQKTSRDPVMNLTQGQVGQ 71

HSP 2 Score: 51.6026 bits (122), Expect = 5.566e-31
Identity = 32/53 (60.38%), Postives = 34/53 (64.15%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EGRG TRLVMG  R +RWEHRVDKGL    PA+V      G  L  GPQT NE
Sbjct:   77 EGRGLTRLVMGS-RADRWEHRVDKGL-ELVPAQVIL---TGLLLLRGPQTVNE 124

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y4004_PSEF5 (UPF0502 protein PFL_4004 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_4004 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.445e-31
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1

Query:  307 MTTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            M++EHDT  E  RL+ST+IRILG LIEKQATSPETYPLTLNALVIACNQKTSREPVMNL+QGQVGQ
Sbjct:    1 MSSEHDTPGEALRLSSTDIRILGSLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLTQGQVGQ 66

HSP 2 Score: 42.3578 bits (98), Expect = 9.445e-31
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            E RGFTRLVMG  R +RWE R+DK L    PA++      G     GPQT NE
Sbjct:   72 EARGFTRLVMGS-RADRWEQRLDKAL-ELVPAQLIL---CGLMFLRGPQTVNE 119

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y2686_PSESM (UPF0502 protein PSPTO_2686 OS=Pseudomonas syringae pv. tomato GN=PSPTO_2686 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.603e-30
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 1

Query:  331 SEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            +E  +LNSTE+RILGCLIEKQAT+PETYPLTLNALVIACNQKTSR+PVMNL+QGQVGQ
Sbjct:   14 AEALQLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQ 71

HSP 2 Score: 48.521 bits (114), Expect = 4.603e-30
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EGRG TRLVMG  R +RWEH+VDKGL    PA+V      G  L  GPQT +E
Sbjct:   77 EGRGLTRLVMGS-RADRWEHKVDKGL-ELVPAQVIL---TGLLLLRGPQTVSE 124

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y2577_PSE14 (UPF0502 protein PSPPH_2577 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2577 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.990e-27
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 1

Query:  310 TTEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            ++E    ++   LNS+E+R+LGCLIEKQAT+PETYPLTLNALV+ACNQKTSR+PVM+L+ GQVGQ
Sbjct:    7 SSESSPNADALHLNSSEVRVLGCLIEKQATNPETYPLTLNALVLACNQKTSRDPVMSLTPGQVGQ 71

HSP 2 Score: 46.2098 bits (108), Expect = 1.990e-27
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EGRG TRLVMG  R +RWEHRVDK +    PA+V      G  L  GPQT +E
Sbjct:   77 EGRGLTRLVMGS-RADRWEHRVDKAV-ELVPAQVIL---TGLLLLRGPQTVSE 124

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y2442_PSEPK (UPF0502 protein PP_2442 OS=Pseudomonas putida (strain KT2440) GN=PP_2442 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.992e-27
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1

Query:  313 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            +EH+T  E  R NS EIR+LG LIEKQATSPE+YPLTLNALV+ACNQKTSREPVMNL+QGQVGQ
Sbjct:    2 SEHETAGEG-RFNSIEIRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQ 64

HSP 2 Score: 41.9726 bits (97), Expect = 1.992e-27
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EG+G TRL MG  R +RWEHRVDK L    PA++      G     GPQT NE
Sbjct:   70 EGQGMTRLQMGS-RADRWEHRVDKAL-ELVPAQLVL---MGLMFLRGPQTLNE 117

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y3252_PSEP1 (UPF0502 protein Pput_3252 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_3252 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.593e-27
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1

Query:  313 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            +EH+T  E  R NS E+R+LG LIEKQATSPE+YPLTLNALV+ACNQKTSREPVMNL+QGQVGQ
Sbjct:    2 SEHETAGEG-RFNSIEVRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQ 64

HSP 2 Score: 41.9726 bits (97), Expect = 2.593e-27
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EG+G TRL MG  R +RWEHRVDK L    PA++      G     GPQT NE
Sbjct:   70 EGQGMTRLQMGS-RADRWEHRVDKAL-ELVPAQLVL---MGLMFLRGPQTLNE 117

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y3531_PSEPG (UPF0502 protein PputGB1_3531 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_3531 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.040e-25
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1

Query:  313 TEHDTTSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            +EH+T  E  R NS EIR+LG LIEKQATSPE+YPLTLNALV+ACNQKTSREPVMNL+QGQVGQ
Sbjct:    2 SEHETAGEG-RFNSIEIRVLGSLIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQ 64

HSP 2 Score: 36.1946 bits (82), Expect = 1.040e-25
Identity = 25/53 (47.17%), Postives = 29/53 (54.72%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            EG+  TRL MG  R +RWE RVDK L    PA++      G     GPQT NE
Sbjct:   70 EGQDLTRLQMGS-RADRWEQRVDKAL-ELVPAQLVL---MGLMFLRGPQTLNE 117

[Close]

BLAST of EY735289 vs. ExPASy Swiss-Prot
Match: Y3184_PSEPW (UPF0502 protein PputW619_3184 OS=Pseudomonas putida (strain W619) GN=PputW619_3184 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.985e-25
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

Query:  328 TSEEPRLNSTEIRILGCLIEKQATSPETYPLTLNALVIACNQKTSREPVMNLSQGQVGQ 504
            T++E R +STEIRILG LIEKQATSPE+YPLTLNALV+ACNQKTSREPVMNL+QGQVGQ
Sbjct:    6 TADEGRFSSTEIRILGALIEKQATSPESYPLTLNALVLACNQKTSREPVMNLTQGQVGQ 64

HSP 2 Score: 33.8834 bits (76), Expect = 2.985e-25
Identity = 24/53 (45.28%), Postives = 28/53 (52.83%), Query Frame = 2

Query:  521 EGRGFTRLVMGQPRPNRWEHRVDKGLGNWGPARVNFPGGAGCFLAGGPQTGNE 679
            E +  TRL MG  R +RWE RVDK L    PA++      G     GPQT NE
Sbjct:   70 ESQDMTRLQMGS-RADRWEQRVDKAL-ELVPAQLIL---MGLMFLRGPQTLNE 117

The following BLAST results are available for this feature:

BLAST of EY735289 vs. ExPASy Swiss-Prot

BLAST of EY735289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142


Match Name	E-value	Identity	Description
Y2135_PSEFS	4.972e-36	90.91	UPF0502 protein PFLU_2135 OS=Pseudomonas fluoresce...	[more]
Y3711_PSEPF	1.798e-32	87.88	UPF0502 protein Pfl01_3711 OS=Pseudomonas fluoresc...	[more]
Y2419_PSEU2	5.566e-31	76.92	UPF0502 protein Psyr_2419 OS=Pseudomonas syringae ...	[more]
Y4004_PSEF5	9.445e-31	84.85	UPF0502 protein PFL_4004 OS=Pseudomonas fluorescen...	[more]
Y2686_PSESM	4.603e-30	86.21	UPF0502 protein PSPTO_2686 OS=Pseudomonas syringae...	[more]
Y2577_PSE14	1.990e-27	69.23	UPF0502 protein PSPPH_2577 OS=Pseudomonas syringae...	[more]
Y2442_PSEPK	1.992e-27	79.69	UPF0502 protein PP_2442 OS=Pseudomonas putida (str...	[more]
Y3252_PSEP1	2.593e-27	78.13	UPF0502 protein Pput_3252 OS=Pseudomonas putida (s...	[more]
Y3531_PSEPG	1.040e-25	79.69	UPF0502 protein PputGB1_3531 OS=Pseudomonas putida...	[more]
Y3184_PSEPW	2.985e-25	84.75	UPF0502 protein PputW619_3184 OS=Pseudomonas putid...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-093-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY735289 ID=EY735289; Name=EY735289; organism=Citrus sinensis; type=EST; length=1018bp
AGCGATCTGCACCTGACGCACCAGCGGGAACATGTCCGGGTACAGGCGTG
CTTGCAGGAAGGCGTTCGGGTCGATGTTCTTGGCGGTGGCGTGGGCTTCG
GCCTTGTTCAGCACATCGCTCAGGGCGTTGAGCATTTGCTTGAAGACCGG
GAGGGAAGCGGCGTACAGGGAAATAGTCATGACAGTCTCGACAGTTGTGG
CAGGGTTTGAAACAGCGGCGATTATAGACATGCCGGCCGCCAGCGCCGCT
TGTCTTTTATTTTTTCAGGATTAGGCTAGTGGGCTCACTGCATTAGGGAA
AGCGCGATGACCACCGAGCACGACACCACTTCCGAAGAGCCGCGCCTGAA
CAGCACGGAAATCCGCATCCTGGGCTGCCTGATCGAAAAGCAGGCTACCA
GCCCTGAAACCTACCCGTTGACCCTCAACGCGCTGGTGATCGCCTGCAAC
CAGAAAACCAGCCGCGAACCGGTGATGAACCTCAGCCAGGGCCAGGTCGG
CCAGAAACCTGCGGGCCCTGGAAGGTCGCGGGTTTACCCGGCTGGTGATG
GGGCAGCCGCGCCCGAACCGCTGGGAGCATCGGGTGGACAAGGGCCTTGG
GAACTGGGGGCCGGCCAGGGTGAATTTCCCAGGGGGGGCTGGTTGTTTCC
TGGCGGGGGGGCCGCAAACGGGCAACGAAACATATGGCCCGCCACGGGAC
CCCTGGCCCGAATTTTGAAAAAACCCCGAACCAAGGGGGGGATCCAACGG
GAAACCCCCAGAATTGCCCGTGGGGTCTGGGGTTTTTTTGGGGGGCCCCG
CTCCACACCGGGGACACCAGGGTATAAATGGGAAAAATGACCCCCCCTTG
GGGATGACCCCGGAGGGAAATTTTAAGAAAATTGTCTCACTGGCGAGCGA
AGGTGGAGAAAAAACCACGATGAGGGACCGGAGTGGGAGAAGGAGAAAAA
ATATGAGGGATCATCACCCACTGAGAGATCACTTGTTATTTAATAACTAA
AATAATGACTTGNATTGG