EY735210

Overview
NameEY735210
Unique NameEY735210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735210 vs. ExPASy Swiss-Prot
Match: SC24B_ARATH (Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.078e-36
Identity = 72/99 (72.73%), Postives = 85/99 (85.86%), Query Frame = 3
Query:    3 DDKLQAVSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQ 299
            DDKLQ  +ECAFQCALLYTT+YG+RRIRVTTLSL CT+ LSNL+R+ADLD+QF C +KQAA+EIPS  L  V+EQ  N C+NAL +YRKFCATV+SSGQ
Sbjct:  783 DDKLQDGAECAFQCALLYTTIYGERRIRVTTLSLSCTNMLSNLFRAADLDSQFACMLKQAANEIPSKALPLVKEQATNSCINALYAYRKFCATVTSSGQ 881          
BLAST of EY735210 vs. ExPASy Swiss-Prot
Match: SC24C_ARATH (Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.432e-32
Identity = 67/99 (67.68%), Postives = 80/99 (80.81%), Query Frame = 3
Query:    3 DDKLQAVSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQ 299
            DDKLQ  +EC FQCALLYTT+ G+RRIRV  LS+PCT+ LSNL+RSADLD+QF C +KQAA+EIPS  L  V+EQ  N C+  L SYRKFCATV+S+GQ
Sbjct:  799 DDKLQDGAECGFQCALLYTTISGERRIRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQAANEIPSKALPLVKEQATNDCITILHSYRKFCATVTSTGQ 897          
BLAST of EY735210 vs. ExPASy Swiss-Prot
Match: SC24D_HUMAN (Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 3
Query:    3 DDKLQAVSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQ 299
            DDKL   S    QCA+LYTT+ GQRR+R+  L L C+S L++LY+S + D     F K A   +   PL  +RE ++N   + L  YRK CA+ S++ Q
Sbjct:  734 DDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQ 832          
BLAST of EY735210 vs. ExPASy Swiss-Prot
Match: SC24C_HUMAN (Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3
Query:    3 DDKLQAVSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQ 299
            DD+L   S    QCALLYT+  GQRR+R+  L+L C + L++LYR+ + DT      K A   + ++P+  VR+ ++  C   L  YRK CA+ SS+GQ
Sbjct:  796 DDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQ 894          
The following BLAST results are available for this feature:
BLAST of EY735210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SC24B_ARATH8.078e-3672.73Protein transport protein Sec24-like At4g32640 OS=... [more]
SC24C_ARATH2.432e-3267.68Protein transport protein Sec24-like CEF OS=Arabid... [more]
SC24D_HUMAN1.213e-1542.42Protein transport protein Sec24D OS=Homo sapiens G... [more]
SC24C_HUMAN2.702e-1541.41Protein transport protein Sec24C OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-110-A07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735210 ID=EY735210; Name=EY735210; organism=Citrus sinensis; type=EST; length=858bp
ATGATGATAAATTGCAGGCTGTATCAGAATGTGCTTTTCAGTGCGCCCTT
CTTTATACCACTGTTTATGGCCAAAGACGAATTCGAGTTACAACTTTATC
TTTGCCATGCACCAGTAATTTAAGTAATCTGTACCGTTCAGCTGACTTGG
ATACTCAATTTACATGTTTTATGAAGCAAGCGGCAAGTGAAATTCCTTCA
ACCCCACTAGCAAATGTCCGGGAACAAATGATGAACCTTTGCGTAAATGC
TCTGGTTTCATATCGTAAATTTTGTGCAACAGTATCATCATCTGGGCAGC
TTATTCTTCCAGAGGCTCTGAAGCTTTTGCCTTTGTACACCCTTGGTAAA
TACTATAATGTTCATTCGTTTTGTGCTTAGCTGTTTGAATATATTATGGT
GCTTGGCACTTGCGTAAAGCTAACATCTTTTATATATTCTGTTTGTTTTC
TGATACTTGTACGTGAGCTATTGACATGGTAACTGAACATCCATTCCTGC
ATTATTTTTTCCTCACTATTGTCATTCATTACCATTAATGTTGTGGGATT
GTTTAGGAATGTGTTAGGAGGATTGAAAGTATCTACGTATGTTTAATTTT
TAGTAGGTTTGGCATCTACAAAATTGGTTAAGATGACATAAGTAACATTG
TGCTGGTTAGAGAATGCTTACATGCTTTAGTATGTAAACTGAATTTAATG
AAATTATTCCAAGATTACTGGATACTGTTTCCTAAGTTTTTACTGTCTTT
CAGTAATTTGAGGGCTTCACTTTTTTGGGTGGTAAGGGAATTTCTTGGCC
TAATTAAATTCTCCTTAATTCTCAAACTAAATCCCAAAAAAGGGGGGAAA
TTACAAGT
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