EY735206

Overview
NameEY735206
Unique NameEY735206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12280 contig Csv1_Contig12280:1..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 5.157e-82
Identity = 154/228 (67.54%), Postives = 179/228 (78.51%), Query Frame = 2
Query:   74 MIFSSALLANPPCVCLPRK---FPVRCSSLPV--SAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLEGGTHLVEFCQKKKFGEMNECS 742
            M+FS + +       LP K    P++ S   +  S++S   S  FDL+TYWTTLITEI+Q L++AI VK+P  IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG  +AILAGDALFPL FQHIVSHTPP LVP   +L +I EIAR VGSTGMAAGQ++DLEGG   + F Q+KKFG M ECS
Sbjct:    1 MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECS 228          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.994e-42
Identity = 82/165 (49.70%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  182 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            S+ FD K Y       +++ LE A+ V+ P +I+ESMRYS+LA G KR  P++C+AACELFG     A P+ACA+EM+H  SL+HDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI + T    V   R++ V+ E+A+ +GS G+ AGQ +D+
Sbjct:   61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKG--VSSERIVRVVGELAKCIGSEGLVAGQVVDV 222          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.217e-42
Identity = 90/210 (42.86%), Postives = 129/210 (61.43%), Query Frame = 2
Query:  146 SSLPVSAASQLRSTQ---FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLEG--------GTHLVEFCQKKKFGEMNECS 742
            SS  V+    LR ++   FD  +Y  T    +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+H+ S T   +V   RV+  + E+A+A+G+ G+ AGQ +D+          G   +EF    K   + E S
Sbjct:   56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEAS 264          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.381e-41
Identity = 91/204 (44.61%), Postives = 124/204 (60.78%), Query Frame = 2
Query:  107 PCVCLPRKFPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            P   L   F  R S  P+S+ S + + +              FD K+Y       I+Q LE AI ++ P +I+ESMRYS+LA G KR  P +C+AACEL G N   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    F+HI   T    V   R++  + E+A+A+G+ G+ AGQ +D+
Sbjct:   35 PLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN--VSSARIVRAVGELAKAIGAEGLVAGQVVDI 235          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.678e-40
Identity = 79/165 (47.88%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  182 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            S+ FD  +Y       +++ L+ A+ ++ P +I+E+MRYS+LA G KR  PV+C+AACEL G     A P  CA+EM+H  SLIHDDLPCMD+D  RRG+P+NH VYG D+A+LAGDAL    F+H+ S T   + P  RV+  + E+A+A+G+ G+ AGQ +D+
Sbjct:   67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDI 229          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.192e-40
Identity = 80/163 (49.08%), Postives = 115/163 (70.55%), Query Frame = 2
Query:  191 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLE 679
            F+ K Y T     +++ L++AI VK P  I+E+MRYS+LA G KR  P++C+AACEL G N+  A   ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH +YG D+A+LAGD+L    F+HIV+ T    V   R++  +AE+A+++G+ G+ AGQ  D++
Sbjct:   76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAG--VTPSRIVGAVAELAKSIGTEGLVAGQVADIK 235          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.969e-38
Identity = 76/175 (43.43%), Postives = 114/175 (65.14%), Query Frame = 2
Query:  152 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            +P        ++ FD K Y       ++  L+ ++ ++ P  + E++RYS+LA G KR  P++C+A CEL G +   A   ACA+EM+H +SLIHDDLPCMD+   RRG+P+NH VYG D+A+LAGDAL  L F+H+   +   + PE R++  + E+ARA+G+TG+ AGQ +DL
Sbjct:   51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPE-RMIRAVVELARAIGTTGLVAGQMIDL 223          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.277e-36
Identity = 79/164 (48.17%), Postives = 107/164 (65.24%), Query Frame = 2
Query:  185 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            T F+L TY       ++  L K+I    P  IY+S+RYS L+ G KR  P++C+A+CEL G     A PTACALEM+H  SLIHDDLP MD+D  RRG+P+NH +YG D+AILAGDAL    F+ I + T    VP   ++ VIA++A +V ++G+  GQ +DL
Sbjct:    6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKN--VPADLIVKVIAQVAHSVTTSGLVGGQIIDL 166          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.177e-35
Identity = 72/162 (44.44%), Postives = 108/162 (66.67%), Query Frame = 2
Query:  191 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            F+   Y  +    +++ LE+AI V  P +I+E+MRY++LA G KR  P++C+A+CEL G    AA P ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H VYG  +AIL+G AL  L F+H+ +      +   R++  + E+AR++G+ G+ AGQ +D+
Sbjct:   83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAE----ISSERMVWAVRELARSIGTRGLVAGQAMDI 239          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.426e-33
Identity = 82/213 (38.50%), Postives = 122/213 (57.28%), Query Frame = 2
Query:  191 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLEG--------GTHLVEFCQKKKFGEMNECSTGGWGVSWLGQKK--KKNQNF 799
            FD K Y  +    I++ L++AI +  P  I+++MRY++LA G KR  P++C+AACEL G     A   ACA+EM+H  SLI DDLPCMD+D  RRG+P+ H V+G  +AIL+G AL  L F+H+        V   +++  + E+A+++G+ G+ AGQ  DL          G   +E+    K G + E S     V   G +K  +K +NF
Sbjct:   79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNF 286          
The following BLAST results are available for this feature:
BLAST of EY735206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GGR_ARATH5.157e-8267.54Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPPS_CATRO3.994e-4249.70Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH5.217e-4242.86Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_HEVBR3.381e-4144.61Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL1.678e-4047.88Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN2.192e-4049.08Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH5.969e-3843.43Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
CRTE_CYAPA4.277e-3648.17Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
GGPP2_ARATH6.177e-3544.44Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH4.426e-3338.50Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-H10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735206 ID=EY735206; Name=EY735206; organism=Citrus sinensis; type=EST; length=804bp
CCGGAACAATCACAAACGCTTCAATTCAACCTGTACTCCAAAACACCAAA
GAAACAATTTTTTTTAAAAAAAAATGATTTTTTCATCAGCATTATTAGCA
AACCCGCCATGTGTTTGCCTTCCAAGAAAATTCCCCGTTCGTTGTTCGTC
TTTACCAGTCTCTGCTGCAAGCCAGTTGAGATCCACCCAGTTTGATTTGA
AGACTTACTGGACTACCCTTATTACTGAAATTGATCAGAATTTGGAAAAA
GCAATCACAGTTAAGTACCCAGAGCAGATCTATGAATCCATGAGATATTC
GGTGTTAGCCAAGGGAACTAAGCGGGCGCCGCCTGTCATGTGTGTGGCAG
CTTGCGAGCTCTTTGGTGTTAATCGGATTGCAGCTTTTCCCACAGCTTGC
GCTCTTGAAATGGTCCATGCTGCTTCATTGATTCATGACGATCTTCCTTG
CATGGATGATGACCCATCTCGCCGAGGTCAGCCCTCAAACCACACAGTCT
ATGGTGTTGACATAGCTATCCTTGCAGGGGATGCACTCTTCCCCCTTGGT
TTCCAACACATTGTGTCCCACACACCCCCCCATCTCGTGCCTGAGCCCCG
TGTCCTTTCGGTGATTGCTGAGATTGCCCGTGCTGTGGGGTCCACTGGCA
TGGCTGCCGGGCAGTTCCTTGATCTTGAAGGTGGAACCCACTTGGTTGAA
TTTTGCCAGAAAAAAAAATTCGGTGAAATGAATGAGTGCTCCACGGGGGG
GTGGGGGGTTTCTTGGTTGGGGCAAAAGAAGAAGAAAAACCAAAACTTTG
GGGA
back to top