EY735189

Overview
NameEY735189
Unique NameEY735189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735189 vs. ExPASy Swiss-Prot
Match: SGPL_ARATH (Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.356e-15
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   23 DKMDFSSAKSSLIRFRASANSFLSQYEPVIXXXXXXXXXXXXXXXQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELP 340
            D   +SS KS LI+ R S NS LS++EP++                S    V EKG K   + F M  +K++PGV  YI+AEKQKVVD++QSG  SK++     LP
Sbjct:    2 DSFSYSSMKSMLIQARGSLNSRLSEFEPLVLLLVPLVSLFLAQIIGSVFGVVHEKGLKACLIGFIMGLLKMIPGVQNYIDAEKQKVVDQLQSGSSSKKKNKTEVLP 107          
BLAST of EY735189 vs. ExPASy Swiss-Prot
Match: SGPL_ORYSJ (Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica GN=SPL PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   29 MDFSSAKSSLIRFRASANSFLSQYEPVIXXXXXXXXXXXXXXXQSFLDAVREKGFKQTFVAFFMSSIKLVPGVNKYIEAEKQKVVDKMQSGVKSKREGWWTELP 340
            MDF+      +R R +AN  LS+YEP++                +   AV ++G +   +A  M++IKL+PGV+ YI AEK+KVVD++QSG  S +    TELP
Sbjct:    5 MDFA------LRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVADRGLRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELP 102          
The following BLAST results are available for this feature:
BLAST of EY735189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SGPL_ARATH1.356e-1541.51Sphingosine-1-phosphate lyase OS=Arabidopsis thali... [more]
SGPL_ORYSJ2.027e-1138.46Sphingosine-1-phosphate lyase OS=Oryza sativa subs... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-F05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735189 ID=EY735189; Name=EY735189; organism=Citrus sinensis; type=EST; length=917bp
TCATTCTGTTCTCGTTTACTTTGACAAAATGGATTTTTCTTCTGCGAAAT
CGTCTTTGATTCGTTTCAGAGCTTCTGCCAATTCATTTTTGTCGCAGTAC
GAACCTGTCATTCTGCTTCTTGCCCCGCTCCTCACTCTCCTCGTCGCGCG
TGTACTTCAATCGTTCCTTGACGCCGTTCGCGAGAAAGGATTCAAGCAAA
CTTTCGTGGCGTTCTTCATGAGCTCAATCAAGTTGGTTCCTGGTGTTAAT
AAATACATTGAAGCGGAGAAACAGAAGGTTGTGGACAAGATGCAGTCTGG
TGTTAAATCCAAAAGAGAGGGCTGGTGGACAGAGTTACCTAGGGCAGGGT
TAGGAGTAGGAGTCGTACAAAAATTAAAAAAGGAAAAGGGAAAAGAGGTT
GGTTTGCCACCCAAAAATGTTCTGGGAACAGTCTATATTGGAAGAATTGA
AACCGTAAAGAAATTTTTTCCCATTGATAAATTGAAGGGCGGGTTCGAAG
ATTCCCCAATAGCCTATACCGTAGACTTTAACGATGCTATTCCCCCACGA
GAACGCTTCATATTGAGGAGGAGAAAATAATATGATGATGTCACACATTC
ACCTCCTCCACATAAAAACAAAAAAGCACGGAGCAAGTAAGGCCAATTAA
ATCTCGCCGAAGAAAAACACCACGACAGGAACGGAAAAACTAACATCACA
CGCAATTCCCCGACCAAAACAAGCCACTATAGCAACCCAGAACACACATG
CTACCCCTCGCCAGTACACGCACAGCGCAAAACATTATAACTGACAGTAT
ATCTACATACAATTGAGAGCAAGCTATGCCATAAACGTATCTCGACTAAC
TATCACACTAGCATCAAATCCATAAAACAACAGATAACATCTATATCCCA
CGCCAACTCCGCAGTAT
back to top