EY756584

Overview
NameEY756584
Unique NameEY756584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2690 contig Csv1_Contig2690:293..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756584 vs. ExPASy Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 83/129 (64.34%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:   37 PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 423
            P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQVKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC++ KFE         LS +  + M   LEKIK+LE+
Sbjct:   27 PIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCDKEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151
The following BLAST results are available for this feature:
BLAST of EY756584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
POP5_ARATH1.703e-4164.34Probable ribonuclease P/MRP protein subunit POP5 O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756584 ID=EY756584; Name=EY756584; organism=Citrus sinensis; type=EST; length=733bp
CCACGCGTCCGAAATAAAGATCTTCCCGTGGATGATCCTGTTATACTTAC
CCAATTTAATGTGTCAAAAGCAATTCGAGACAGCATTCTTGTAAACTTCG
GCGAGTGTGGTCTAGCTTCTTCGCTTGGATCATTCCAAGTCAAGTATGTG
AATCCCATCACCAAGCTATGTATCATCAGAGCCTCAAGGGAGGATTGTCA
GAAGGTTTGGTCTGCAATGACCATGGTTAGAAGCATAGGAAATTGCCTGG
TTCTATTTAACGTACTGGACCTAAGTGGGAGCATCAGGGCCTGTAAGAAT
GCTGCATTGAAGTGTGAGGAGGTGAAATTTGAACATTATAAGCTTGCCGT
TGGAGCACGTCTCTCAGCCGATGTTACTCAACACATGGAAAACTGTCTGG
AGAAGATCAAAATTTTGGAACACTGAAAATATCTTATCCTTGTAAGTGGT
TAAGTAGTAGATTTTCATATTCTCTTTTAACTACAATAGCTTGCTCCATT
AATCACAGACTTTCTTTTTACCATTTTTAGCTTTTTTTTCCCACCGTTTT
TTTTTAACTTTCTTTCTATTTTCGTAGAAATATCATAATCTCACCTTTAA
TTGCTGATTGTAGTGATTTTGGCTTGATGANGATGCAACTCTTTGTAAGC
ACCATCNAAGCTCAAGAAACTTTGTTTAATTGGTTTCAATAGATGATTTA
GAGTATTTAAAAAAAAAAAAAAAAAAAAAAAAG
back to top