EY756580

Overview
NameEY756580
Unique NameEY756580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8317 contig Csv1_Contig8317:38..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756580 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   28 ASISSTNFPALLPRSGFVPKGLT--HASPVYGMPAMATTRGRVRCSLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 393
            A+I++++  +L+ R+  V        +SP+ G+P+M T R +V CS+E                                     VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:    2 ATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123          
BLAST of EY756580 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 52/123 (42.28%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   28 ASISSTNFPALLPRSGFVPKGLTHASPVYGMPAMATTRGRVRCSLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 396
            AS  S   PALL     +   +  ++PV G+P M   +G VRCS+E                                     VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:    8 ASTVSAARPALL-----LKPTVAISAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120          
BLAST of EY756580 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  277 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 396
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110          
The following BLAST results are available for this feature:
BLAST of EY756580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL1.830e-1741.94Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH9.082e-1742.28Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.357e-1282.50Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-C02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756580 ID=EY756580; Name=EY756580; organism=Citrus sinensis; type=EST; length=571bp
CCACGCGTCCGGAAAAAAAAATTACCGGCATCAATTTCATCAACCAACTT
TCCTGCATTGCTTCCAAGATCAGGTTTTGTGCCCAAGGGCTTAACTCACG
CATCACCAGTCTATGGAATGCCTGCAATGGCAACAACAAGGGGACGTGTG
AGATGCAGCTTAGAGGAAAAGGCACCAGCTGCTGCCAGCGGCAAGAGCTC
AAAAGCAAGCATGGTTGCATCACTTATGGCAGCCGCCGCAGCCTTGAGTA
CGGCCGCAGGGCCAGCCATGGCGTTGGTGGATGAGAGAATGACCACAGAA
GGAACAGGGCTTCCATTTGGACTAAGCAACAACACTCTTGGGTGGATTCT
CTTTGGTGTGTTTGGATTGATTTGGGCTCTCTATTTTATTTACACTGGCG
ATCTTGAAGAAGATGAAGAGTCTGGCTTGTCCCTTTGAATTAAGGGTTAT
TTAAACTTAGGCTTGTTGAATTTATTAATGCCCTCTTGTTAAAGAACTGG
AAAACCTTTAAATCAACCAAAGAAAAGCTTTTGGCTCTTGAAAAAAAAAA
AAAAAAAAAAAAAAAGGGGGG
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