EY756545

Overview
NameEY756545
Unique NameEY756545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.058e-44
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 2
Query:   92 PAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            PA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK  G GVY++VDKY ANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   14 PAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-44
Identity = 88/127 (69.29%), Postives = 101/127 (79.53%), Query Frame = 2
Query:   92 PAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            PAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK  GKGVYQFVDKY ANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:   10 PAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.069e-43
Identity = 90/128 (70.31%), Postives = 100/128 (78.12%), Query Frame = 2
Query:   92 PAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            PA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK  G GVY+FVDKY ANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   14 PAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.286e-42
Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 2
Query:  101 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK  GKGVYQ+VDKY ANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 84/124 (67.74%), Postives = 97/124 (78.23%), Query Frame = 2
Query:  101 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK  GKGVYQ+VDKY ANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.375e-38
Identity = 81/128 (63.28%), Postives = 95/128 (74.22%), Query Frame = 2
Query:   92 PAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 463
            P+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKY ANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   13 PSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of EY756545 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.885e-30
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  107 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKANGKGVYQFVDKYRANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 460
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR A GKGVYQF DKY ANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of EY756545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH2.058e-4472.44Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC4.585e-4469.29Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM5.069e-4370.31Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU3.286e-4268.55Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC2.130e-4167.74Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL8.375e-3863.28Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU2.885e-3056.30Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-H01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756545 ID=EY756545; Name=EY756545; organism=Citrus sinensis; type=EST; length=843bp
TCCTTCAAACACCCACGCGTCCGAAACAAAACTTTTCCCCACAACAAAGC
AAATGGCAGCCTCAGTGATGGCTTCTTCGTTGAGCCTGAATCCAGCTCCT
TTCACTGTGGAGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAAC
TTCATTCAAAATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCT
ATGGAGTAAATGGTGGTATGGATTTGAGGGAAGGTCTGGATGCATCCGGC
AGGAAGGCTAATGGGAAAGGTGTTTACCAATTTGTTGACAAGTACCGTGC
CAATGTTGATGGATACAGTCCTATCTACAATGAGAACGACTGGTCTCCCA
GTGGTGATGTCTATACTGGTGGAGCAACTGGCTTGGCAATCTGGGCTGTT
ACTCTTGCCGGTCTTCTTGCAGGAGGAGCACTTCTCGTCTACAACACAAG
TGCTTTGGCACAGTAGATGAATCTCAATCAATGTTACATTATTATCTCTA
TTTTGTATAACTTGTCAATGTTGCTGTTAAATGACCTTTCACAGCTACTT
CGCGGATCTATTTTTTGTAATGTTCTGGGGGGATTTAATTGAGACATAAA
CCCACCATATTTGGTACTCCCTTCTGGGCCTTCTTGAAAAGGCAGGCCCG
GCTTTTAACCCAAAAATAAACTTAACAACACAGAACATACACTCCAATAA
TCTTTCCAAAAATAGGGGGCCGCCCCAAAGGCCCCACCCTTATAACCGGG
GCCCCAAAACACAACCCCGCCAACAGGTCCCCAATTCCTACTCCTCCGCC
CTTTTACACACCCATAAATGGAAAACCCTGGGGAAACCAAATT
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