EY756540

Overview
NameEY756540
Unique NameEY756540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756540 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.977e-45
Identity = 117/254 (46.06%), Postives = 153/254 (60.24%), Query Frame = 2 
Query:    8 SEQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAM--KNFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSN-MDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPLTQGIGSFKWXXXXXXXXXXXXXXQR------VLDKNQSLXSIGNLSVDSTVSMPATVXRKPFN 742
            S +LWK++PKS Q    D RS  FP WWNW++RQ P A+   + +   ++F+LTP R    + PSP  Q+S  KQH+    N  DT TP+S++ST  T +RP+ + +S           +YSR R+ G  SPF    +DDDSL SCPPF  P+YM PTVSAKAKVRPNSNPKER  GTP SE +RR+S+P TQ   +F+W                      VL+K+++L S+GNLS+ ST SM  TV RK FN
Sbjct:  444 SRKLWKNSPKSTQ----DNRS--FPQWWNWVDRQNPLASPAPSYSQPQRDFRLTPSR----LCPSPLSQSS--KQHHIRLDNHFDTSTPRSSRSTFHTPSRPIHTGTS-----------RYSRGRLRGQDSPF----KDDDSLTSCPPF--PSYMAPTVSAKAKVRPNSNPKERVMGTPVSE-KRRMSYPPTQ--DTFRWNKGSLVMSNSSSHRGPGSPGGVVLEKHKTLKSVGNLSIGSTASMATTVGRKEFN 665
The following BLAST results are available for this feature:
BLAST of EY756540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD14_ARATH5.977e-4546.06Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-G08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756540 ID=EY756540; Name=EY756540; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAACAGTTGTGGAAATCCACTCCAAAATCAGCTCAGACAT
CTCTTGCGGATATCAGATCAGGAGGATTCCCGTGGTGGTGGAACTGGTTA
GAACGTCAACTGCCTGGGGCTAATACTCCTGAAACTTCAGCCATGAAGAA
TTTCCAACTTACCCCACCAAGGCCAAATTCTGAGATCAAGCCTAGCCCAC
GCGTACAAGCTAGCACTCACAAGCAACATAATTTCGAGTTCAGTAACATG
GATACTCCCACACCAAAATCTGCAAAATCAACCATACTCACAGCAACACG
ACCTGTTCGAAGTCCATCCTCAAGTAAGATCCCACAAGGCAGTCCAAGCC
TGTCAAAATACTCGAGAGCAAGAGTTAGTGGAGCTGCTTCTCCTTTTGAC
GTACCATTGAGGGACGATGACAGCCTCATGAGCTGCCCGCCATTTTCTGT
TCCAAACTATATGACACCGACCGTTTCGGCAAAAGCAAAAGTGAGACCTA
ATAGTAATCCTAAGGAGAGGTTCCCAGGAACTCCAAGCAGTGAATCACAA
AGAAGGCTTTCTTTCCCTTTAACACAAGGCATTGGCTCTTTCAAGTGGAA
AAAAGGTTCATTGCTCTCTACTAGCAAGGATTCCAGCTCTCAAAGGGTTT
TAGACAAGAATCAATCTCTANCATCTATAGGAAATTTGAGTGTGGATTCA
ACTGTTTCCATGCCGGCTACTGTCNGTCGGAAACCGTTTAACGATTCGTG
TGATTTTTTTTCCCATATTTTTTAACTTTTTTCTTGATTTCTGGNNGTAT
TTNGATGAGTGATGANTATTATATTTGGGTTTTTTTCCCTTATAAAGAAC
TGATGAAGACATAANCTANGAATGATGTATGGGTGTAACGGA
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