EY756528

Overview
NameEY756528
Unique NameEY756528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756528_ssr303 microsatellite EY756528_ssr303:303..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13569 contig Csv1_Contig13569:186..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.862e-73
Identity = 158/261 (60.54%), Postives = 180/261 (68.97%), Query Frame = 1
Query:   94 SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDP-AXFCVRL***WFMARLP 867
            S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIRQGK               L+MAAQLATPEAMAFIV+HGTGIVCVSMK +DLERL LPLMV QKEN+EKL TAFTVTVDAKHG TTGVSARDRATT+L+LAS DSKP  F+RPGHIFPLKYREGG LKRAGHTEAS    VLAG DP    C  +     MARLP
Sbjct:   44 STFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLP 303          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.474e-34
Identity = 80/161 (49.69%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  343 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA--KHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            F+++ EAIEDIRQGK               L+MAA+  TPEA+ F+ K+G G++C+S+  E  E+LDL  M     N +   T F V++DA  KHG TTG+SA DRA T+    S D+KP  F RPGH+FPLK R GG L+RAGHTEAS   A LAG  PA
Sbjct:    9 FNTVEEAIEDIRQGKMVIVVDDPDRENEGDLVMAAEKVTPEAINFMAKYGRGLICLSLTPERCEQLDLHPMTPM--NTDPKGTYFCVSIDAHPKHGTTTGISAYDRALTIKLAISPDAKPSDFVRPGHVFPLKARPGGVLERAGHTEASVDLARLAGLYPA 167          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMB (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup B GN=ribB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.552e-32
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  346 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG TTG+SA DRA T+ T  S  +KP    +PGHIFPL+ ++GG L RAGHTEA    A + G  PA
Sbjct:    5 SPIPEILADIKAGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPA 160          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup A GN=ribB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.640e-32
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  346 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG TTG+SA DRA T+ T  S  +KP    +PGHIFPL+ ++GG L RAGHTEA    A + G  PA
Sbjct:    5 SPIPEILADIKVGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPA 160          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNWW (Riboflavin biosynthesis protein ribBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.640e-32
Identity = 83/176 (47.16%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  343 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDP-AXFCVRL***WFMARLP 867
            FSSI E I+DI++GK               +I+AA+ A PEA+ F+  H  G++C+ + GE L+ L++  MV   EN +   TAFTVTVD + G TTG+SA +RA TV  L    SKP  F +PGHIFPL+YREGG L+RAGHTE S     LAG  P A  C  +     MARLP
Sbjct:    2 FSSIEEVIQDIKEGKMIVLVDDEDRENEGDVIIAAEKAGPEAINFMATHAKGLICMPIIGERLDELEIHDMVT--ENTDNHETAFTVTVDYR-GTTTGISAFERAATVKALIDSVSKPSDFRKPGHIFPLRYREGGVLRRAGHTEGSIDLTRLAGLYPAAVICEVMNEDGTMARLP 174          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.350e-31
Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  343 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            F +I  A+ DI  GK               LI AA+ ATPE +AF++++ +G +CV + GED +RL LP M A   N +K  TA+TV+VDA+ G TTG+SA DRATT+  LA  D+K     RPGH+ PL+ ++GG L+R GHTEA+   A +AG  PA
Sbjct:    4 FDTIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMIRYTSGYICVPLTGEDCDRLGLPPMYAT--NQDKHGTAYTVSVDAREGITTGISAADRATTMRLLADADAKADDLTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLRPA 160          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBB_ENTS8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ribB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.007e-31
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  343 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            F  +  AI  +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV  + N     T FTVT++A HG TTGVSA DR TT+    + D+KP   HRPGH+FPL+ + GG L R GHTEA+     LAGF PA
Sbjct:   13 FERVENAIAALREGRGVMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMV--ENNTSAFGTGFTVTIEAAHGVTTGVSAADRITTIRAAIADDAKPSDLHRPGHVFPLRAQPGGVLTRGGHTEATIDLVSLAGFKPA 169          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBB_ERWT9 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ribB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.700e-31
Identity = 70/156 (44.87%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  352 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPA 819
            +  AIE +R G+               +I AA+  T E MA  ++HG+GIVC+ +  E LE+LDLP+MV  + N     T FTVT++A  G TTGVSA DR TT+    + D++P   +RPGH+FPL+ R GG L R GHTEA+     LAGF PA
Sbjct:   16 VTHAIEALRAGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLNEERLEQLDLPMMV--QNNTSAYGTGFTVTIEAAEGVTTGVSATDRLTTIRAAIADDARPSDLNRPGHVFPLRARSGGVLTRGGHTEATLDLVTLAGFKPA 169          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIB3_SCHPO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Schizosaccharomyces pombe GN=SPBC23E6.06c PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.750e-31
Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  346 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXD-SKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDP 816
            +SI EA+ D R GKF              LI+A    T E MAF+V+H +G VCV M GE L+ L++P+MV    N++++ TA+ VT+D  +G TTG+SA DRA T   LA+ + + P  F+RPGHI PL+ R+GG L+R GHTEA+     LAG  P
Sbjct:    3 ASIEEAVNDFRDGKFLIVLDDETRENEGDLIIAGCKVTTEQMAFLVRHSSGYVCVPMTGERLDSLEIPMMV--DNNEDRMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGGVLERDGHTEAAVDLCKLAGLPP 158          
BLAST of EY756528 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.949e-30
Identity = 77/165 (46.67%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  343 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGNTTGVSARDRATTVLTLASXDSKPGGFHRPGHIFPLKYREGGXLKRAGHTEASXGSAVLAGFDPAXFCVRL 837
            F S+  AIED+R GKF              LI+A +  T E M F+++H TG+VC ++  E L  LDLP MV  K+N  +  T FTV+VDA HG TTGVSA DR   V  LA   SKP  F  PGH FPL    GG LKRAGHTE++     LAG  P      L
Sbjct:   13 FVSLERAIEDLRAGKFVIVVDEASREDEGDLIIAGEKITVEKMTFLLQHTTGVVCAALSQERLLSLDLPPMV--KDNRCRFKTPFTVSVDAAHGVTTGVSAADRTKVVQLLADPKSKPEDFISPGHFFPLASSPGGVLKRAGHTESTVDLMELAGLQPCGVLAEL 175          
The following BLAST results are available for this feature:
BLAST of EY756528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
RIBBA_ARATH1.862e-7360.54Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_AQUAE6.474e-3449.69Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBB_NEIMB3.552e-3246.203,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBB_NEIMA4.640e-3246.203,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBBA_SYNWW4.640e-3247.16Riboflavin biosynthesis protein ribBA OS=Syntropho... [more]
RIBBA_NOCFA1.350e-3145.91Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBB_ENTS83.007e-3144.033,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBB_ERWT96.700e-3144.873,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIB3_SCHPO8.750e-3145.573,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBBA_CHLPN1.949e-3046.67Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756528 ID=EY756528; Name=EY756528; organism=Citrus sinensis; type=EST; length=915bp
CCACGCGTCCGTGTTAGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAA
TGGGCACTCTTCATATTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCA
TTAGTATCAAGGGTGTCGGCAAAACTAGAGCTACACTGATATCTGGAGAA
GGTGACCTTTTAGCTTATCCCAATGGCAATAACCTTGTGGCCGAAAGTAC
TGGTGCTGATGATCAATTGGTGGGGATTGAGTTACAACCGGATGCAATAG
CATTTGGAGCACTTGCAGCAGATACCGCTCCCACAACTTTTGGATTTTCC
AGTGATGATGATGAATTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTC
TATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGTCGTGGTCG
TGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCAGCACAG
CTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGAACTGGAAT
TGTTTGCGTGAGCATGAAGGGGGAAGATCTGGAGAGGCTGGATCTTCCTT
TAATGGTTGCACAAAAGGAAAATGATGAGAAACTTTGTACTGCATTCACA
GTGACAGTGGATGCAAAACATGGAAACACCACAGGGGTCTCAGCTCGTGA
TAGGGCAACAACTGTTTTGACTCTTGCTTCTANGGATTCAAAACCTGGGG
GATTTCATCGCCCGGGCCATATTTTTCCTCTGAAGTACAGAGAGGGTGGA
NGTCTGAAAAGAGCTGGTCATACAGAAGCTTCTGNTGGATCTGCTGTGCT
AGCTGGATTTGACCCTGCACANTTTTGTGTGAGGTTGTGATGATGATGGT
TCATGGCTAGATTACCAAACTCGGGATTTGCTAGAGGGAAATTAAANTAA
ATCATTGCTGATTAA
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