EY756498

Overview
NameEY756498
Unique NameEY756498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13409 contig Csv1_Contig13409:10..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARVTIRRLREQTES 570
            G YAV RKAVGIWGCK   KVKAGGAYTLN  SAVT R TIRRLREQTES
Sbjct:   43 GKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARVTIRRLREQTES 570
            G +AV RKAVGIWGCKD  KVKAGGAYT+N  SAVT R TIRRLREQTE+
Sbjct:   43 GKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARVTIRRLREQTES 570
            G Y+V RK VGIWGCKD  KVKAGGAYT+N  SAVT R TIRRLREQTES
Sbjct:   43 GKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARVTIRRLREQTE 567
            G +AV RKAVGIWGCKD  KVKAGGAYTLN  SAVT R TIRRLREQTE
Sbjct:   43 GKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARVTIRRLREQTE 567
            G Y V RKAVGIWGCKD  KVKAGGAYT+N  SAVT R TIRRLREQ E
Sbjct:   43 GKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of EY756498 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 38/50 (76.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  424 GIYAV-RKAVGIWGCKDSSKVKAGGAYTLNIGSAVTARV-TIRRLREQTE 567
            G Y V RKAVGIWGCKD  KVKAGGAYT+N  SAVT R  TIRRLREQ E
Sbjct:   43 GKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
The following BLAST results are available for this feature:
BLAST of EY756498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL37A_GOSHI8.467e-1482.0060S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ1.106e-1378.0060S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
R37A1_ARATH1.106e-1378.00Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
RL37A_PSEMZ1.444e-1381.6360S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A2_ARATH7.167e-1377.5560S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA1.765e-1176.0060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-C09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756498 ID=EY756498; Name=EY756498; organism=Citrus sinensis; type=EST; length=718bp
CCACGCGTCCGCTTCATATGAATTCATGTTGTTGGTTGGTGAAAATCAAA
GTCGAGTACAATTGATCTAATTATTGTTACTGGATTTGCAATGTAGTTGA
ACTTGAAAATAAGAAAATAGTAAGATTTTGAACCCAAAGTTGGAGCTTTT
AGAATTTAGATATGTTTAGTTAATACTTATCTCATATTCTCCAGCTGCAA
TGCTTCTTTCTTTGATGTAACACCTCCTAGTTTGTTATGTTTCTTTGTCA
AAGGATTTAGATTCTTCCAATTTCTTTTTTTCTTTTAATCACTGTTTTTC
TCTTTCCAATACTGATGATTTTGGTTTTGCTCTTGTTTTTTTGTTTTAAA
ACTTTTCCAACTCATGTATTTGATCATGGTTTCATACTATCGGGTTTTGC
AGACGAAAAGGACCTAGAAGACAGGAATTTATGCTGTGAGGAAGGCTGTG
GGAATCTGGGGTTGCAAAGACTCTAGCAAGGTGAAAGCTGGAGGCGCTTA
CACTTTGAATATTGGTAGTGCTGTGACCGCAAGAGTTACCATTAGGAGGT
TGAGGGAGCAGACTGAGAGTTAATTTTGTTACCAAACTATCTTTTTTTTT
TTTTTTTCAATTTATTTGAGATGGGATTAATTCCTGGGACAGGATTGTCT
NAATGCATTTCTATTCTTGGATTTTTTTTTAATCTACTAAAAATTTTATT
ACAAAAAAAAAAAAAAAG
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