EY756426

Overview
NameEY756426
Unique NameEY756426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756426_ssr148 microsatellite EY756426_ssr148:148..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.858e-31
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            K++ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG R HG+ Y  FMHGL +  I+++RKVLS+++  EP  FKALV+ ++ A
Sbjct:   15 KKVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLTYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.426e-31
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R   K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+ Y +F+HGL   NI LNRKVL++++++    FK +VDI++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLLYSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplT PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.220e-31
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNAFPGNKNLV 414
            R   K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+ Y +F+HGL   N+ LNRKVL++++++    FK +VD+ + A   NK+ V
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLLYSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEAL--NKSRV 122          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_EHRRW (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplT PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.683e-30
Identity = 60/106 (56.60%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R   K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+ Y +F++GL   NI LNRK+L+++++H    FK +VD+++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLLYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_EHRRG (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) GN=rplT PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.683e-30
Identity = 60/106 (56.60%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   73 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNA 390
            R   K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+ Y +F++GL   NI LNRK+L+++++H    FK +VD+++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLLYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_MESSB (50S ribosomal protein L20 OS=Mesorhizobium sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.331e-29
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNAFPGNKN 408
            K++ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR+HG+ YG F+ GL K  I+++RKVL+++++HEP  F ALV  S+ +    KN
Sbjct:   15 KKVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLTYGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.739e-29
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K++ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R+HG+ YG FMHGL    + LNRK+L+E++++    F  L++
Sbjct:   15 KKVLKLAKGYRGRAKNCYRIALQRVEKALQYAYRDRRNRKRDFRGLWIIRINAAAREHGLTYGRFMHGLKLVGVDLNRKILAEMAVNHKDDFAKLIE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_RHILO (50S ribosomal protein L20 OS=Rhizobium loti GN=rplT PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.059e-29
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVDISRNAFPGNKN 408
            K++ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR  R+LWIQRINA T +HG+ YG F+ GL K  I+++RK+LS++++HEP  F ALV  ++ A    KN
Sbjct:   15 KKVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRSFRALWIQRINAATHEHGLTYGRFIDGLNKAGIEIDRKILSDMAIHEPQAFAALVAKAKVALEYLKN 122          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_WOLWR (50S ribosomal protein L20 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.608e-29
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+ YG FMHGL    I LNRK+L+E++++    F  LV+
Sbjct:   15 KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLTYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111          
BLAST of EY756426 vs. ExPASy Swiss-Prot
Match: RL20_WOLPM (50S ribosomal protein L20 OS=Wolbachia pipientis wMel GN=rplT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.608e-29
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   85 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKDNIQLNRKVLSELSMHEPYRFKALVD 375
            K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+ YG FMHGL    I LNRK+L+E++++    F  LV+
Sbjct:   15 KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLTYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111          
The following BLAST results are available for this feature:
BLAST of EY756426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_RHOCS1.858e-3161.7650S ribosomal protein L20 OS=Rhodospirillum centen... [more]
RL20_EHRCJ2.426e-3160.3850S ribosomal protein L20 OS=Ehrlichia canis (stra... [more]
RL20_EHRCR9.220e-3157.0250S ribosomal protein L20 OS=Ehrlichia chaffeensis... [more]
RL20_EHRRW2.683e-3056.6050S ribosomal protein L20 OS=Ehrlichia ruminantium... [more]
RL20_EHRRG2.683e-3056.6050S ribosomal protein L20 OS=Ehrlichia ruminantium... [more]
RL20_MESSB1.331e-2956.4850S ribosomal protein L20 OS=Mesorhizobium sp. (st... [more]
RL20_WOLPP1.739e-2960.8250S ribosomal protein L20 OS=Wolbachia pipientis s... [more]
RL20_RHILO5.059e-2955.5650S ribosomal protein L20 OS=Rhizobium loti GN=rpl... [more]
RL20_WOLWR6.608e-2962.8950S ribosomal protein L20 OS=Wolbachia sp. subsp. ... [more]
RL20_WOLPM6.608e-2962.8950S ribosomal protein L20 OS=Wolbachia pipientis w... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756426 ID=EY756426; Name=EY756426; organism=Citrus sinensis; type=EST; length=952bp
TTTCGTCGACCCACNCGTCCGGAATCGAATGTTCCCATTCATCATTGTTT
AAGGATTAAAGAAAAGAGAGAAAGGATGAACAAGAAGGAGATATTTAAGC
TGGCAAAGGGGTTCAGAGGAAGAGCGAAAAATTGCATAAGAATAGCAAGA
GAGAGAGTGGAGAAAGCATTGCAGTATTCCTACAGAGACCGCCGCAACAA
GAAGCGTGACATGCGCTCCCTTTGGATTCAACGCATCAACGCCGGCACTC
GCCAACACGGCGTTAACTATGGTAACTTTATGCATGGACTGATGAAGGAC
AACATCCAACTGAACAGGAAAGTTCTGTCAGAGCTGTCGATGCATGAACC
ATATAGGTTCAAGGCCCTTGTAGACATCTCTCGCAATGCCTTCCCTGGAA
ACAAAAATCTTGTGCATCCTCCCAGAAAGGCTGACATTTCAATCAATGCG
TAGTTAGTAATTAGCGACCCGAATATTGCATTCTTTAGCATTTTACTATT
ACTGGCATGCAAAGGATGCGCTTTGACGAACCCATTATACTGCTTATGTG
TTTTCCCAAGAATTTGACGGTCCACACTGATTAATACCTTTTGCGGTGAA
AAATGGTTTGAATCAGAATTTCGGAGGTTTCCTGATGGTATTCATGCTTG
CCAGGTTAAGGAGGACCTTTTCTTTTTCTCACTCCTACCCAGGGCGCCTT
TACAAAAAAAAAAAAAAAATAAGCGGGTTCCCTCCTTAAGGGATCCCTAC
TTCACTAATCGCCGCCGCGACCTCCAACGCTCCTTCTTATCGTGTACATT
AACCCCTTCCTCTCGGCCGAGCTTTACCCACCCCCGCGCTGTGAAAAACC
GTGGGGGGCCCAACAAAATTCTCTTTGAGAACCTCTCCCTTTTCGCCAGG
GGGAATAAAACCACAAGCCCGCCCCTCTCACCCCCCCAAAATTTCCACAC
TC
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