EY756409

Overview
NameEY756409
Unique NameEY756409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 7.462e-83
Identity = 158/183 (86.34%), Postives = 162/183 (88.52%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 559
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIKI+Q D
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTD 199          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.115e-78
Identity = 151/175 (86.29%), Postives = 155/175 (88.57%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 535
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E Q
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ 191          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.850e-63
Identity = 123/178 (69.10%), Postives = 144/178 (80.90%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 544
            +LLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ ++
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVVQ 192          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.484e-62
Identity = 120/168 (71.43%), Postives = 137/168 (81.55%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 514
            +LLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT 183          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.729e-58
Identity = 106/165 (64.24%), Postives = 132/165 (80.00%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 505
            +LLL+GDSGVGKSCLLLR                  KI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R+
Sbjct:   15 KLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.417e-57
Identity = 113/180 (62.78%), Postives = 135/180 (75.00%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 550
            +LLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   ++
Sbjct:   11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.262e-55
Identity = 113/187 (60.43%), Postives = 138/187 (73.80%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 559
            +LLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.262e-55
Identity = 113/187 (60.43%), Postives = 138/187 (73.80%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 559
            +LLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.262e-55
Identity = 113/187 (60.43%), Postives = 138/187 (73.80%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 559
            +LLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of EY756409 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.955e-55
Identity = 107/165 (64.85%), Postives = 130/165 (78.79%), Query Frame = 2
Query:   11 ELLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 505
            +LLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
The following BLAST results are available for this feature:
BLAST of EY756409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH7.462e-8386.34Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU1.115e-7886.29Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI3.850e-6369.10Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI9.484e-6271.43Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA3.729e-5864.24GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO1.417e-5762.78GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA2.262e-5560.43Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.262e-5560.43Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.262e-5560.43Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_RAT2.955e-5564.85Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-C08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756409 ID=EY756409; Name=EY756409; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTT
GTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATTACA
ACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAAACG
AATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAA
TTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATATGAT
GTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATCCGTAATAT
CGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGG
CCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCT
CTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAA
CCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAA
GGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAAC
CAACCTGACCAGGCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTG
CTGCGGTTCTTAAGCAATCTATGAGGGTGAGATCACATGGGTATATGTCA
AGGGCATCATTTTGGTTGGGACGACTAATTTTGTCAACTATATCATTGGN
GGGCTGGATGGTTCTATCNATATTTTACAACTACCACACGCTTTGCTGTG
AATGATAGATCATCTGGGTTTGGCATTAATTATATATATTAAGTCCTTTC
ANTTTCTTTGTCCTTGGGCTGAAAAACATGGAATGCCTGTTATTTGCTTT
TTCGAACTGAAAATTAATAGAGCANGCTTCCTTCTCTGAAAAAAAAAAAA
AAAAAAAAAAA
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