EY756395

Overview
NameEY756395
Unique NameEY756395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756395_ssr160 microsatellite EY756395_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756395 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2
Query:   29 VAEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDY 157
            + E  K+LPC H YHG+CIVPWL  RN+CPVCR+++ TDD +Y
Sbjct:  266 MGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEY 308          
The following BLAST results are available for this feature:
BLAST of EY756395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIP8_ARATH5.091e-1260.47E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-B05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756395 ID=EY756395; Name=EY756395; organism=Citrus sinensis; type=EST; length=649bp
TTCGGTAGACCCACGCGTCCGGTTTGGCGTTGCGGAGAAAGCAAAGCGGT
TGCCATGCTCTCATCGGTATCATGGAGAGTGCATTGTTCCATGGCTGAGA
ATCAGGAATACATGTCCAGTTTGTCGATATGAGATGCCTACTGATGATAT
TGATTATGAGAGGAGGAGGAGGACTGAAAGAACAGGTCGTGTCCTGTGAT
GGTAAATTATGGTCACAAATGATTTTGAAGGTCATTTCTTTTGCCCTAGG
TTGTTAAAATTGAAGATATTGCTGTTGNGAANAGNTTATCTCTTTACATG
AAGGTTATGAGACATTTTTTGGTAATTAAATATGTGATTTGGTGAGTGTA
TGAGAGGGTCGGTGACCGCATTGTACTCTTGTGATCTTTTTGAATCTAAA
TATGTTTCAGTGTATATACTGTGTGCCTTTTCTCCTTTTCTTGTGCACTA
ACAGTATCTGGAGCAACTGTAATATGTAATACATGCAGTATTTAAAGCAT
AGCTCCTTTTAGCTAGTCTTTTCTTGTATTCTATGGGCTACTTGTATTCT
TTCTACTTAATATCTTGCATTCTTTGTACTTAATATTGTTGGAGTGGCTA
TATTGGGTATGGGGCTTATTGTTCTAAAAAAAAAAAAAAAAAAAAAAAA
back to top