EY756379

Overview
NameEY756379
Unique NameEY756379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756379_ssr613 microsatellite EY756379_ssr613:613..622. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756379_ssr519 microsatellite EY756379_ssr519:519..530. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.524e-70
Identity = 116/139 (83.45%), Postives = 131/139 (94.24%), Query Frame = 1
Query:   13 AKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNKL 429
            AKGLAW++CVYGVPLL+VNGFLVLIT+LQHTHPALPHY SSEWDWLRGAL+TVDRDYG+LNKVFHNITDTHVAHHLFSTMPHYHAMEAT A+KPILGEYY+FD  PF KA WREA+EC+YVEPD+++ +KG+FWY NKL
Sbjct:  245 AKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.402e-69
Identity = 115/137 (83.94%), Postives = 127/137 (92.70%), Query Frame = 1
Query:   16 KGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNK 426
            KGL WL+CVYGVPLLIVNGFLV ITYLQHTH ALPHY+SSEWDWL+GAL+T+DRDYG+LNKVFH+ITDTHVAHHLFSTMPHYHAMEAT A+KPILGEYYQFD  PFYKA WREA+ECLYVEPDE +  KG++WYRNK
Sbjct:  250 KGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 1
Query:   13 AKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNKL 429
            A+G+A ++C+YGVPLLIVN FLVLITYLQHTHP+LPHY+SSEWDWLRGAL+TVDRDYG+LNKVFHNITDTHVAHHLFSTMPHYHAME T A+KPILG+YYQFDG P+ KA WREAKEC+YVEPD     KG+FWY NKL
Sbjct:  246 AQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.652e-66
Identity = 111/139 (79.86%), Postives = 127/139 (91.37%), Query Frame = 1
Query:   13 AKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNKL 429
            A+G+A +IC+YGVPLLIVN FLVLITYLQHTHP+LPHY+SSEWDWLRGAL+TVDRDYG+LNKVFHNITDTHVAHHLFSTMPHY+AMEAT A+KPILG+YYQFDG P+Y A +REAKEC+YVEPD     KG++WY NKL
Sbjct:  245 AQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.611e-49
Identity = 81/137 (59.12%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    7 VRAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWY 417
            V AKG AW+ C+YG+P+L V  F  +ITYL HTH +LPHY+SSEW+WLRGALST+DRD+G LN V H++T THV HHLFS +PHYHA EA  A+  +LG++Y+ D  P  KA WREAKEC+++EP++   +KG++WY
Sbjct:  236 VAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   43 YGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVE 378
            Y VP L VN +LVLIT+LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D  P   A WR  +EC +VE
Sbjct:  278 YIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE 390          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   43 YGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVE 378
            Y +P L VN +LVLIT+LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D  P   A WR  +EC +VE
Sbjct:  278 YIIPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE 390          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   13 AKGLAWLICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            A G   +  +YG P LI   +L  +TYL H      LP Y   EW +LRG L+TVDRDYG+ N + H+I  THV HHLF  +PHYH  EAT A KP+LG+YY+
Sbjct:  229 AFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYR 330          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   19 GLAWLICVYGVPLLIVNGFLVLITYLQH---THPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            G  +++ +YGVP LI   +L  +TYL H   TH  LP Y   EW +LRG L+TVDRDYG +N V H+I  THV HHLF  +PHYH +EAT + K +LG+YY+
Sbjct:  231 GPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTHK-LPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of EY756379 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   31 LICVYGVPLLIVNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQ 315
            L+ +YGVP +I   +L L+TYL H      LP Y   EW +LRG L+T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT A KP+ G+YY+
Sbjct:  309 LLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404          
The following BLAST results are available for this feature:
BLAST of EY756379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN1.524e-7083.45Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN6.402e-6983.94Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU3.513e-6780.58Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH8.652e-6679.86Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL9.611e-4959.12Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP4.792e-3258.41Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS6.258e-3257.52Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC2.635e-2250.49Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU4.495e-2251.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN4.495e-2251.55Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756379 ID=EY756379; Name=EY756379; organism=Citrus sinensis; type=EST; length=678bp
CCACGCGTCCGGGCAAAAGGACTGGCCTGGCTTATATGCGTGTATGGGGT
ACCGCTACTCATTGTGAATGGCTTTCTTGTACTGATCACATACTTGCAGC
ACACGCATCCTGCACTGCCGCACTACAACTCATCCGAATGGGACTGGCTG
AGGGGGGCTCTCTCGACTGTCGATAGAGATTACGGCGTGTTGAACAAAGT
CTTCCATAACATTACAGATACACATGTAGCTCACCATCTCTTCTCAACCA
TGCCACATTACCATGCTATGGAGGCGACAATCGCGATGAAGCCAATCCTC
GGCGAGTATTACCAGTTCGATGGGATGCCCTTTTACAAGGCGGCGTGGCG
GGAGGCGAAAGAGTGTCTTTACGTAGAACCGGACGAGAATTCTCCGACCA
AAGGCCTTTTCTGGTACAGGAACAAACTGTGATAACATGTCTGCTGGTAA
GTTTGATGAAGATGTAGTTACAGTTTAATTAAGTACTATTTGAGCAGTGG
TTTCCAAAGTTGTTCAGCAAATAAATAAATTTTTTTTTTAAAAAAAAGCT
CTCGGTACTTGGTTTGTAATGGTCCTGTATTAAACATTTTAAGTACTTAA
GAACTCTAATTATGTGTGTGTGACATAAAATTTCTCCTAATCTGNNCATT
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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