EY756373

Overview
NameEY756373
Unique NameEY756373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3639 contig Csv1_Contig3639:592..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 2
Query:   17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            NRVYVGNL+WGVD  ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273          

HSP 2 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVS 241
            +++VGNL +  D  AL  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.655e-35
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 2
Query:   17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            NRVYVGNL+WGVD  ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279          

HSP 2 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF*AVAETS 295
            +++VGNL +  D  AL  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+ +   P +R+  +  E S
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENS 178          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.253e-34
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            A  GNRVYVGNLSWGVDD+ALE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+
Sbjct:  200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289          

HSP 2 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT SS  EV+ A    NG +L GR +RV+     P R
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.053e-33
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 2
Query:   17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF
Sbjct:  208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292          

HSP 2 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            +++VGNL + VD  AL  LF   G V   +V+YD+ SGRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A P++R+
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA-PAKRE 171          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 2
Query:   17 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF
Sbjct:  207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291          

HSP 2 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            +++VGNL + VD  AL  LF   G V   +V+YD+ +GRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A P++R+
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA-PAKRE 170          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 2
Query:    5 ASGGNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            +  GNR+YVGNLSWGVDD+ALE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++EV  AI+SLNG DL GR IRVS AEARP R QF
Sbjct:  253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342          

HSP 2 Score: 78.9518 bits (193), Expect = 8.490e-15
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQ 271
            +++VGNLS+ VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A EV+ A    NG +  GR +RV+     P R +
Sbjct:  100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 183          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.062e-25
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            RVYVGNL W VD+  LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S  +E++ AI +L+G +L GRAIRV+VAE RP RR +
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329          

HSP 2 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +++VGNL++ V+  AL  LF + G V  A+V+Y+RE+ +SRGFGFVT SS +E + A++  N  DL GR + V+ A  R SR
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.229e-23
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            R+YVGN+ WG+DD  LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S  E+ +AI +L+G  L GR IRV+VAE R  R  F
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315          

HSP 2 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +++VGNL + VD   L  LF + G V  A+V+Y+R++ +SRGFGFVT S+ EE + A++  N  D+ GR + V+ A  R  R
Sbjct:  137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            RVYVGNL W VD   LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS  EV++AI +L+G  L GRA+RV+VAE RP R
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231          

HSP 2 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPS 262
            +++VGNL + VD   L  +F   G V  A+V+Y+RE+ RSRGFGFVT S+ EE + A++ LNG D+ GR + V+ A  R S
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS 136          
BLAST of EY756373 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSRRQF 274
            R+YVGN+ W +DD  LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS  E+  AI +L+G  L GR IRV+ AE RP R  +
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276          

HSP 2 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   20 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPSR 265
            +++VGNL + +D   L  LF++ G V  A+V+Y+RE+ RSRGFGFVT S+ EE D A++  +  DL GR + V+ A  R SR
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179          
The following BLAST results are available for this feature:
BLAST of EY756373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ROC1_NICSY5.655e-3584.8829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.655e-3584.8830 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH6.253e-3475.56Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICPL4.053e-3381.4031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY6.913e-3381.4029 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_ARATH2.011e-3273.3329 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_ARATH4.062e-2565.8831 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY2.229e-2361.1831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.106e-2265.8528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY1.887e-2258.8228 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756373 ID=EY756373; Name=EY756373; organism=Citrus sinensis; type=EST; length=418bp
CCACGCGTCCGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTG
TTGATGATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTG
GAAGCCAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGG
GTTTGTGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCT
TGAATGGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCAGTGGCTGAA
GCAAGGCCATCAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCA
GTTGTTTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTAT
CAGTGCTATCAAATCATCGGCTTCAAAGACAGATTCAGGATTAAAAAAAA
AAAAAAAAAAAAAAAAAA
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