EY732281

Overview
NameEY732281
Unique NameEY732281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11487 contig Csv1_Contig11487:468..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732281 vs. ExPASy Swiss-Prot
Match: TTC4_DICDI (Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.587e-20
Identity = 71/238 (29.83%), Postives = 103/238 (43.28%), Query Frame = 3
Query:   24 CEKGLEQDPDNKELKKLAVEI-----DSRKREQEAREAQVSKAVGEAKNLLSAIEDRGLKIGKATFQ----ELTGLRKPFLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFAAHLDMMYSESCPPLA-WDKEHSYTREAIELYYEAVSGVSLSKTKLLRYFLEGTAGANVESISEEEKDGTHGSTYDYSAGQGSSRWVKVNEKRKLHDVLKEPNFIIPGTPVFYVVSKTSSFYKEF 707
            C+ GL  +P NK+L  +         D +KREQ+  + +      +        E    K+G   F          RK  +D+NN +H+PV+ LY E   SDFI DF E   F  HL MM+    P  A WD +  YT + IE+Y+E         T   +  L          I E EK                 +W++V     +  V+  P +IIP  P+FY+VS+ + FYK+F
Sbjct:  187 CDLGLSHEPTNKDLSTIRENANKKLQDIKKREQDKIDKENQLKQQQQLLATKLYEKNKYKLGHQIFDMSQYTYQSDRKVTIDQNNDVHFPVVFLYPEFGKSDFIMDFQEDHTFGDHLQMMFPPENPEFAPWDTKKEYTMDRIEVYFE---------TNWTKPILSDI------KIKEIEK-----------------KWIRVKHTTDIAKVISHPTYIIPEIPIFYIVSRGNLFYKKF 392          
BLAST of EY732281 vs. ExPASy Swiss-Prot
Match: TTC4_MOUSE (Tetratricopeptide repeat protein 4 OS=Mus musculus GN=Ttc4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.186e-13
Identity = 54/165 (32.73%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   12 AKSFCEKGLEQDPDNKELKKLAVEIDSRKR--EQEAREAQVSKAVGEAKN--LLSAIEDRGLKIGKATFQE-------------LTGL--RKPF-----LDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFAAHLDMMYSESCPPLAWDKEHSYTREAIELYYE 434
            A ++C++GL+ D   K+L ++  + D  KR  E++ R+A++ +   + +N  LL AI+ R +++   +  E             L GL    P+     +D    L WPVL LY E   SDFI  F E   F  HL  M+SE+    +WD EH Y  E +E+Y+E
Sbjct:  170 AVNWCDEGLQIDAKEKKLLEIRAKADKLKRMEERDLRKAKLKEKKEQHQNEALLQAIKARNIRLVSESAGEDEDSASNGPAEILLDGLSSENPYGARLSIDDQGRLSWPVLFLYPEYAQSDFISAFHEDTRFIDHLMAMFSEA---PSWDSEHKYHPENLEVYFE 331          
BLAST of EY732281 vs. ExPASy Swiss-Prot
Match: TTC4_HUMAN (Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.628e-12
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   12 AKSFCEKGLEQDPDNKELKKLAVEIDSRKR--EQEAREAQVSKAVGEAKN--LLSAIEDRGLKIGKATFQE------------LTGLR-------KPFLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFAAHLDMMYSESCPPLAWDKEHSYTREAIELYYEAVSGVSL----SKTKLL------RYFLEGTAGA 503
            A ++C++GL+ D   K+L ++  + D  KR  +++ R+A + +     +N  LL AI+ R +++ +A  ++            L GL        +  LD    L WPVL LY E   SDFI  F E   F  HL +M+ E+    +WD E  Y  + +E+Y+E      L    +K+ LL      RYF++    A
Sbjct:  170 AVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSLDGQGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGET---PSWDLEQKYCPDNLEVYFEDEDRAELYRVPAKSTLLQVLQHQRYFVKALTPA 363          
The following BLAST results are available for this feature:
BLAST of EY732281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TTC4_DICDI1.587e-2029.83Tetratricopeptide repeat protein 4 homolog OS=Dict... [more]
TTC4_MOUSE4.186e-1332.73Tetratricopeptide repeat protein 4 OS=Mus musculus... [more]
TTC4_HUMAN4.628e-1229.44Tetratricopeptide repeat protein 4 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-059-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732281 ID=EY732281; Name=EY732281; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGGCAAAATCATTTTGTGAAAAAGGACTTGAGCAGGACCCA
GATAACAAGGAACTGAAGAAGCTTGCTGTGGAGATTGATTCAAGGAAGCG
GGAACAAGAGGCGAGGGAGGCTCAAGTTTCCAAGGCTGTGGGCGAGGCTA
AGAATCTTCTATCTGCAATTGAAGACAGAGGATTGAAGATAGGGAAGGCA
ACATTTCAAGAACTTACTGGATTGAGGAAGCCATTTTTAGATAAAAATAA
TATTCTTCACTGGCCAGTTCTTCTTCTATATGCAGAAGTTATGTCCAGTG
ATTTTATTGAGGACTTCTGTGAGACAGACATGTTTGCTGCTCATCTTGAT
ATGATGTATTCAGAAAGTTGTCCACCATTGGCATGGGATAAAGAACACAG
TTATACTCGTGAAGCTATTGAATTGTACTATGAGGCTGTTTCAGGAGTTA
GTCTATCAAAAACAAAACTTCTCCGCTATTTCCTAGAGGGTACTGCAGGT
GCTAATGTGGAAAGCATCAGTGAAGAAGAGAAGGATGGAACTCATGGTTC
CACTTATGATTACTCTGCAGGTCAAGGCTCTTCCAGATGGGTCAAAGTAA
ATGAAAAAAGAAAGCTTCATGATGTTCTGAAAGAACCAAACTTCATAATC
CCAGGGACTCCAGTATTTTATGTTGTTTCAAAGACCTCCAGCTTCTACAA
AGAGTTCAAAGGTGGGCAATGGTCTCCTCCGCCATGACTTAGTAGCATAA
TTGAGATAAGCGGTGTTGGTTTTTGATTTATCTTTTGAAGATGGATCTTG
TCAGGTACAGGCTCCGTAAAAATTATTTCATGGTACCCGGACAG
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