EY732278

Overview
NameEY732278
Unique NameEY732278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12117 contig Csv1_Contig12117:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.996e-86
Identity = 145/195 (74.36%), Postives = 167/195 (85.64%), Query Frame = 1
Query:   13 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 597
            NLCKVWDRRC N KGKPAG+LMGHLEGITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSNA   +  R+ EWDYRWM+YP +ARDLKHP D S ATYKGHSVL TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV+G+QV+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct:  279 NLCKVWDRRCFNAKGKPAGILMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWMEYPQEARDLKHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.163e-84
Identity = 140/197 (71.07%), Postives = 160/197 (81.22%), Query Frame = 1
Query:   13 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 603
            NLCKVWDRRC N KG+PAGVLMGHLEG+TFIDSRGDGRY ISNGKDQ  +LWDIRKMSS A  +   R ++WDYRWM+YP  A+ LKHP DQS+ATY+GH VLRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV+G QVA L +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++
Sbjct:  277 NLCKVWDRRCFNHKGQPAGVLMGHLEGVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWMEYPAHAKTLKHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 99/182 (54.40%), Postives = 122/182 (67.03%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 546
            +CKVWDRR +     KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  331 ICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 99/182 (54.40%), Postives = 122/182 (67.03%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 546
            +CKVWDRR +     KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  331 ICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.924e-51
Identity = 99/182 (54.40%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 546
            +CKVWDRR +     KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  331 ICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 99/182 (54.40%), Postives = 120/182 (65.93%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 546
            +CKVWDRR +     KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P +A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG +  W++
Sbjct:  331 ICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.306e-50
Identity = 99/182 (54.40%), Postives = 120/182 (65.93%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 546
            +CKVWDRR +     KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P  A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  331 ICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_CAEEL (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.656e-40
Identity = 93/193 (48.19%), Postives = 118/193 (61.14%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK---MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 570
            L KVWD+R  +    +P GV  GH +G+T +DSR D RYL+SN KDQ IK+WD+RK   MS   +     +S  WDYRW   PP    L  P   D SV T +GHSVL TL+R +FSP  STG++YIYTG     V VYD++SG     LK HT+ VR+C WHP++  +VSS+WDG   V  W+    G  AP
Sbjct:  335 LVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQSQHWDYRWQPAPP---GLCQPVAGDTSVMTLRGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523          
BLAST of EY732278 vs. ExPASy Swiss-Prot
Match: DCA11_CAEBR (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.187e-38
Identity = 88/193 (45.60%), Postives = 113/193 (58.55%), Query Frame = 1
Query:   16 LCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG---FRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 570
            L KVWD+R  +     P GV  GH +G+T++DSR D RYL+SN KDQ IK+WD+RK S            +S  WDYRW   PP    L  P   D SV T +GHSVL TL+R  FSP  +TG+++IYTG     + VYD+V+G     LK H + VR+C WHP +  +VS+SWDG   V  W+    G  AP
Sbjct:  314 LVKVWDKRAWSDGDVIPVGVFAGHRDGVTYVDSRQDERYLLSNSKDQTIKVWDLRKFSCQGGVEATRACVQSQHWDYRWQPAPP---GLCQPVQGDTSVMTLRGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVWTWDERAEGVIAP 502          
The following BLAST results are available for this feature:
BLAST of EY732278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LE14B_LITER1.996e-8674.36LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR4.163e-8471.07LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
DCA11_PONAB4.645e-5154.40DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_HUMAN4.645e-5154.40DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_BOVIN7.924e-5154.40DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
DCA11_RAT1.035e-5054.40DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_MOUSE2.306e-5054.40DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_CAEEL1.656e-4048.19DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
DCA11_CAEBR1.187e-3845.60DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-059-E04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732278 ID=EY732278; Name=EY732278; organism=Citrus sinensis; type=EST; length=795bp
CCACGCGTCCGCAATCTATGCAAGGTATGGGATAGACGCTGTCTAAATGT
GAAAGGGAAGCCAGCAGGAGTCCTGATGGGACACCTAGAAGGGATCACGT
TCATTGATAGCCGTGGAGATGGTCGTTATCTGATCTCAAATGGTAAAGAT
CAGGCCATCAAACTTTGGGATATTCGGAAAATGTCCTCTAATGCATCCTG
CAATTTAGGATTTAGGAGTTATGAATGGGATTACAGATGGATGGACTACC
CACCCCAGGCAAGAGATTTGAAACACCCATGTGATCAATCCGTTGCTACG
TATAAAGGTCATTCTGTCTTGCGTACTCTTATCCGGTGCCACTTTTCCCC
TGTATACAGCACTGGCCAAAAGTATATCTACACTGGATCCCATGATTCTT
GTGTTTATGTTTATGACCTGGTGAGTGGTGAGCAAGTTGCTGCACTCAAG
TACCATACTTCACCCGTTAGAGACTGTAGTTGGCACCCAAGTCAACCAAT
GCTTGTTAGCTCTTCTTGGGATGGAGATGTTGTCAGGTGGGAGTTTCCGG
GTAATGGAGAAGCTGCTCCTCCTCTAAACAAGAAGAGGATCCGGAGGAGA
CAGTTTTACTTGTGATGCATGCAAACTATTTATGTTATGATGTGATGAAT
AACGACAGTTGACAATGCTGTTAATGTATATGCCAACATATGAGGCTTTA
TGTCCTCAAAAATGAATTCCACCTTGCAAAATCCCCAAAATGTGTGCTAA
GGTATGGTCCACTAATGTCACTATGACCCCGCGATGCTTCACCCA
back to top