EY756344

Overview
NameEY756344
Unique NameEY756344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8227 contig Csv1_Contig8227:202..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.982e-88
Identity = 154/188 (81.91%), Postives = 162/188 (86.17%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLSDPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            +  G L  D+GFDPLGLSDPEGTGGF EPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY            KDEKSMK+ KL+E+KNGRLAMLAILGYF+Q LVTG GPYQ
Sbjct:   65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQ 252          

HSP 2 Score: 26.9498 bits (58), Expect = 1.982e-88
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  595 NNNVLTSLKFH 627
            NNNVLTSLKFH
Sbjct:  263 NNNVLTSLKFH 273          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 5.738e-88
Identity = 153/188 (81.38%), Postives = 162/188 (86.17%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLSDPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            +  GSL  DYGFDPLGLSDPEGTGGF EP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAY            KDEKS+K+ KL+EVKNGRLAMLAILGYF+QGLVTG GPYQ
Sbjct:   67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 254          

HSP 2 Score: 26.9498 bits (58), Expect = 5.738e-88
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  595 NNNVLTSLKFH 627
            NNNVLTSLKFH
Sbjct:  265 NNNVLTSLKFH 275          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.263e-25
Identity = 74/189 (39.15%), Postives = 99/189 (52.38%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            + +GSL+ D GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K +E+ NGRLAMLA LG+ VQ  VTG GP++
Sbjct:   66 YLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFE 232          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.762e-24
Identity = 74/200 (37.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   11 GSLSRDYGFDPLGL-SDPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGP 559
            GSL  D+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + +E+KNGRLAMLA++G + Q + TG+GP
Sbjct:   80 GSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 247          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.790e-23
Identity = 71/188 (37.77%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPY 562
            + +GSL  D GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E   K     E+ NGRLAMLA LG+ +Q  VTG GP+
Sbjct:   65 YLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEK-----EIANGRLAMLAFLGFIIQHNVTGKGPF 230          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.989e-23
Identity = 71/200 (35.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   11 GSLSRDYGFDPLGL-SDPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGP 559
            GSL  D+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + +E+KNGRLAMLA++G + Q + TG+GP
Sbjct:   80 GSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 247          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.734e-18
Identity = 67/189 (35.45%), Postives = 93/189 (49.21%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            +  GSL  D GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y     +  Y             + K       +E+ NGRLAMLA LG+ VQ  V G GP++
Sbjct:   45 YLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGRVFNPLNFAPLENKE------KELANGRLAMLAFLGFLVQHNVHGKGPFE 210          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 71/202 (35.15%), Postives = 102/202 (50.50%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQTYW 574
            + +G    DYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K++E+KNGRLAM ++ G+FVQ +VTG GP +  +
Sbjct:   68 YLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 71/199 (35.68%), Postives = 101/199 (50.75%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            + +G    DYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K++E+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct:   66 YLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238          
BLAST of EY756344 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 71/199 (35.68%), Postives = 101/199 (50.75%), Query Frame = 2
Query:    2 HASGSLSRDYGFDPLGLS-DPEGTGGFTEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLQEVKNGRLAMLAILGYFVQGLVTGSGPYQ 565
            + +G    DYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K++E+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct:   66 YLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238          
The following BLAST results are available for this feature:
BLAST of EY756344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB13_SOLLC1.982e-8881.91Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.738e-8881.38Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH3.263e-2539.15Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB12_PETHY2.762e-2437.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA1.790e-2337.77Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_SOLLC3.989e-2335.50Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB120_HORVU1.734e-1835.45Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB26_PETSP5.046e-1835.15Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ5.046e-1835.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.046e-1835.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-E08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756344 ID=EY756344; Name=EY756344; organism=Citrus sinensis; type=EST; length=786bp
CCACGCGTCCGGCAGCCTCTCTCGAGACTATGGATTCGACCCACTTGGTC
TCTCAGACCCTGAAGGCACAGGAGGGTTCACCGAGCCAAAATGGCTGGCC
TACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGC
CATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTG
CCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAAC
TACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGG
ATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGG
GCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGAT
CCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGA
TGAGAAGTCAATGAAGGATTTCAAGCTNCAGGAAGTGAAGAATGGAAGAT
TGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGG
AGTGGGCCTTACCAGACCTATTGGATCACTTGGCTGATCCTGGAAACAAC
AATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGTTCAT
TGCTTGAAATATATATTCCAAGCCTTGTCATCCCCACTCTGNTCTATTCT
ACTTTCCCCATTGAAANTTATCTATGGGAAAAGGGAATGTAATTTGGCCG
AAATGACATGTTATTGGCTAAACTGGATCCCTTAGT
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