EY756337

Overview
NameEY756337
Unique NameEY756337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.579e-42
Identity = 99/205 (48.29%), Postives = 130/205 (63.41%), Query Frame = 3
Query:   12 KLQSSLFPLGFQQLEHTTRPARVSSANFMSETGNSKNISCLLTMGNPTQSFKDNIEVKTPHIILFGQLILPQQNSSQSCSGDTIVN-SLSDGNPEKTA--ISSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            KLQSSL P G  QL+H  +P R+++   +       +ISCLLT+G+P  + K + +     ++LFG+ IL +Q  S   +    V  S SDGN E T    +SD S    +QNG  +N S  G P C+D+K  D+GLE GHCKVFM+SEDVGRTLDLSV+GSYEELY +LA+MFGIE AE+ S+V YRDAAG++      P   F
Sbjct:  477 KLQSSLSPHGLHQLDHGMQP-RIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEF 680          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.453e-42
Identity = 93/197 (47.21%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   12 KLQSSLFPLG-FQQLEHTTRPARVSSANFMSETGNSKNISCLLTMGNPTQSFKDNIEVKTPHIILFGQLILPQQNSSQSCSGDTIV-----NSLSDGNPEKTAISSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSV 584
            KL   L   G F +L+  T P+R+S    +S      NISCLL++  P  + K +    TPHI+LFG+ I  +Q  + S S +T+      NS  +GN  KT  +SDGSGS++         S +G      H+ SDLGLE GHCKVFMESEDVGRT+DLSV GSYEELYG+LA+MFGIE  E+ +++ +RDAAG V
Sbjct:  473 KLHLGLLHSGSFNRLDAITPPSRISKGFVVSSAPAHDNISCLLSISTPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSSGSTETLSPGVTGNSSPNGNAHKTGNASDGSGSSI-----CIGFSSQG------HEASDLGLEAGHCKVFMESEDVGRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAAGVV 658          

HSP 2 Score: 33.113 bits (74), Expect = 8.453e-42
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  587 HTGDEPFSEFLKTARRLTIL 646
            H G+ PFS+F+K ARRLTI+
Sbjct:  660 HPGEVPFSDFMKAARRLTII 679          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.628e-33
Identity = 91/176 (51.70%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  102 ETGNSKNISCLLTMGN-PTQSFKDNIEVKTPHIILFGQLILPQQNSSQSCSGDTIVNSLSDGNPEKTAISSDGSGSAVHQNGPLE---NSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            +T N K   C LTMG  P    K     K  HI+LFG+LILP++  S+  S DT        N EKT ISS GS    +QNG      +SSDEGSP C        GLE GHCKVFMES+DVGRTLDLSVLGSYEEL  KL++MFGI+ +EM S+VLYRDA+G++      P   F
Sbjct:  492 DTKNEKGF-CFLTMGTTPCNDTKS----KKSHIVLFGKLILPEEQLSEKGSTDT-------ANIEKTQISSGGS----NQNGVAGREFSSSDEGSP-CSKKVHDASGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEF 650          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.430e-27
Identity = 85/208 (40.87%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   15 LQSSLFPLGFQQLEH----TTRPARVSSANFMSETGNSKNISCLLTMGNPTQSFKDNIEVKTPHIILFGQLILPQQNSSQS--CSGDTIVNSLSDGNPEKTAISSDGSGSAVHQNGPLENSSDEGSPWCKDHKK-SDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            LQSSL   G ++ +H    +  P R+S+   M  +  ++ +S            K   + K P ++LFGQ IL ++  S S   S     NS  + N EK A  S+GSGS V QN P +N+S E   W +++   S+LGLE G CKVF+ES+ VGR LDLS L S+E+LYG+L+ MF I+SAE+ S VLYR A G V      P   F
Sbjct:  465 LQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALS---------MGAKKPDDAKPPGLMLFGQRILTERQMSLSGTTSPAATGNSSLNWNTEKGA--SEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEF 661          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.124e-27
Identity = 83/222 (37.39%), Postives = 107/222 (48.20%), Query Frame = 3
Query:   45 QQLEHTTRPARVSSANFMSETGNSK---------------------------NISCLLTMGNP--TQSFKDNI-EVKTPHIILFGQLILPQQNSSQSCSGDTIVNSLSDGNPEKTAISSDGSGSAVHQNGPLENSSDEGSPWCKDHKKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIES-AEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            QQL  +  P+ +S  N  S TGN+K                           NISC LTMGNP   Q  K ++  VKT   +LFGQ IL +Q   Q  +    +   ++   EK  ++                    G  W      S  GLE GHCKVFMESEDVGRTLDLSV+GSY+ELY KLA MF IE  +++ ++V+YRDA G +  +   P   F
Sbjct:  452 QQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSENSNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQ---QVMNRKRFLEEEAEAEEEKGLVA-------------------RGLTW----NYSLQGLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGDEPFSDF 647          

HSP 2 Score: 31.187 bits (69), Expect = 4.124e-27
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  593 GDEPFSEFLKTARRLTI 643
            GDEPFS+F+K  +RLTI
Sbjct:  640 GDEPFSDFMKATKRLTI 656          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 70/197 (35.53%), Postives = 100/197 (50.76%), Query Frame = 3
Query:   66 RPARV--SSANFMSETGNSKNISCLLTMGNPTQSFKDNIEVKTPHIILFGQLILPQQNSSQSCSGDTIVNSLSDGNP-------EKTAISSDGSGSAVHQNGPLENSSDEGS-PWCKDH---KKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            RP R+  S+   +   G   + +C     +P+   K   + K    +LFGQ IL ++          I N  SDG P       EK   +S+GS S V Q  P +N++   S P+   +   + S+  L  G CKVF+ESE VGR+LDLS L S+EELY  L++MF I S E+ S+++YR  AG V      P  +F
Sbjct:  497 RPPRIIISTDLTIGSPGKPDDAAC-----SPSSGGKKIDDTKPRGFLLFGQAILTEEQ---------IKNGNSDGRPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAF 679          
BLAST of EY756337 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 70/197 (35.53%), Postives = 100/197 (50.76%), Query Frame = 3
Query:   66 RPARV--SSANFMSETGNSKNISCLLTMGNPTQSFKDNIEVKTPHIILFGQLILPQQNSSQSCSGDTIVNSLSDGNP-------EKTAISSDGSGSAVHQNGPLENSSDEGS-PWCKDH---KKSDLGLEMGHCKVFMESEDVGRTLDLSVLGSYEELYGKLANMFGIESAEMFSNVLYRDAAGSVNTLEMSPSVSF 617
            RP R+  S+   +   G   + +C     +P+   K   + K    +LFGQ IL ++          I N  SDG P       EK   +S+GS S V Q  P +N++   S P+   +   + S+  L  G CKVF+ESE VGR+LDLS L S+EELY  L++MF I S E+ S+++YR  AG V      P  +F
Sbjct:  497 RPPRIIISTDLTIGSPGKPDDAAC-----SPSSGGKKIDDTKPRGFLLFGQAILTEEQ---------IKNGNSDGRPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAF 679          
The following BLAST results are available for this feature:
BLAST of EY756337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARFR_ORYSJ4.579e-4248.29Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]
ARFV_ORYSJ8.453e-4247.21Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFP_ARATH6.628e-3351.70Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFH_ORYSJ1.430e-2740.87Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFJ_ARATH4.124e-2737.39Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFJ_ORYSJ1.213e-1835.53Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI1.213e-1835.53Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756337 ID=EY756337; Name=EY756337; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGAAACTGCAGTCGAGTCTGTTTCCACTGGGCTTTCAGCAG
CTTGAACATACTACAAGACCTGCTAGAGTTTCAAGTGCCAATTTTATGAG
TGAAACCGGAAATAGTAAAAATATTTCTTGTCTGCTGACTATGGGAAATC
CCACTCAGAGTTTTAAGGATAACATTGAAGTAAAGACACCCCACATCATA
TTGTTCGGTCAACTCATTCTTCCCCAGCAAAATAGCTCTCAAAGCTGTTC
TGGTGATACGATTGTAAACAGTTTATCAGATGGGAACCCAGAGAAGACAG
CAATTTCTTCTGATGGTTCTGGTTCTGCGGTGCATCAGAACGGTCCGTTG
GAAAACTCTTCCGATGAAGGGTCTCCTTGGTGCAAAGATCACAAAAAATC
AGACCTAGGTTTGGAGATGGGTCACTGCAAGGTGTTCATGGAATCGGAGG
ATGTAGGTCGAACCCTTGATCTGTCTGTCCTAGGATCGTACGAGGAGCTA
TATGGAAAGCTAGCCAACATGTTTGGCATAGAAAGTGCAGAGATGTTTAG
CAATGTGCTGTACCGGGATGCAGCCGGTTCTGTTAACACACTGGAGATGA
GCCCTTCAGTGAGTTTCTGAAGACAGCAAGAAGGCTAACTATTCTCACAG
ATTCAGGCAGTGACNGTGTAGGAAGATAGAGATCAAGAGAAGTCTAGTTT
TCGATAATTTGTACAGTTCCAAACCTTTGTTTCTCTTTGCTTTTCTTTTT
GGCCTTTTGGGGGGGGGNTGGAAGAGTCGCTTCATCCATTTTTTGGAAAT
TGTANTTCATGGTTGTTAATACAATCCTCAAGTTGCTCTAAAAAAAAAAA
AAAAAAAAAAGGGCGGCCCTTTAAG
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