EY732208

Overview
NameEY732208
Unique NameEY732208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig764 contig Csv1_Contig764:1209..1911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.809e-54
Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSKS 333
            GKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHLIEATEAA+PVLGKYYREPKKS P+PF+L GDL RS+ +DHYVSD GDVVYYQTDPQL G+ KS
Sbjct:  340 GKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSAPLPFHLLGDLTRSLKRDHYVSDVGDVVYYQTDPQLTGAEKS 447          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.810e-51
Identity = 87/104 (83.65%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 321
            GKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREPK SGP+P +L G LI+SM +DH+VSD GDVVYY+ DP+LNG
Sbjct:  329 GKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPKLNG 432          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.810e-51
Identity = 87/104 (83.65%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 321
            GK WSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV+GKYYREPKKSGP+P +L G L+RSM +DHYVSD GDVVYYQ DP+L+G
Sbjct:  350 GKAWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREPKKSGPLPLHLLGSLVRSMKEDHYVSDTGDVVYYQKDPKLSG 453          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.109e-50
Identity = 89/108 (82.41%), Postives = 98/108 (90.74%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKS-GPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 330
            GKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV GKYYREPKKS  P+PF+L G++IRS   DH+VSD GDVVYYQTD ++NGSSK
Sbjct:  344 GKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSDTGDVVYYQTDSKINGSSK 451          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 315
            GKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL EAT+AA+PVLGKYYREPKKSGPIPF+L  DL RSM +DHYVSD+G++V+YQTDP +
Sbjct:  270 GKEWSYLRGGLTTVDRDYGLFNNIHHDIGTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVSDSGEIVFYQTDPHI 371          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 80/106 (75.47%), Postives = 98/106 (92.45%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSS 327
            G+EWSYLRGGLTT+DRDYGW NN+HHDIGTHVIHHLFPQIPHYHL+EAT++A+ VLGKYYREP+KSGP+PF+L   L++S+S+DH+VSD GD+VYYQTDP+L+  S
Sbjct:  270 GQEWSYLRGGLTTVDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFHLLKYLLQSISQDHFVSDTGDIVYYQTDPKLHQDS 375          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 330
            GKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L G L +S+ +DH+VSD GDVVYY+ DP L G  K
Sbjct:  294 GKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLGILAKSIKEDHFVSDEGDVVYYEADPNLYGEIK 400          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 330
            GKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L   L +S+ +DHYVSD G+VVYY+ DP L G  K
Sbjct:  336 GKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSIKEDHYVSDEGEVVYYKADPNLYGEVK 442          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 330
            GKEWSYLRGGLTT+DRDYGW  NIHHDIGTHVIHHLFPQIPHYHL+EAT+AA+PVLG YYREP++S P+PF+L   LI+SM +DH+VSD GDVVYYQTD  L  S +
Sbjct:  273 GKEWSYLRGGLTTVDRDYGWIYNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYREPERSAPLPFHLIKYLIQSMRQDHFVSDTGDVVYYQTDSLLLHSQR 379          
BLAST of EY732208 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 1
Query:   10 GKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 315
            GKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  274 GKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375          
The following BLAST results are available for this feature:
BLAST of EY732208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3C_SESIN4.809e-5487.04Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3D_ARATH3.810e-5183.65Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_RICCO3.810e-5183.65Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SOYBN1.109e-5082.41Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_TOBAC1.770e-4883.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU1.957e-4775.47Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA1.957e-4778.50Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH2.164e-4677.57Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_SOYBN1.832e-4575.70Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH2.025e-4476.47Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-057-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732208 ID=EY732208; Name=EY732208; organism=Citrus sinensis; type=EST; length=705bp
CACGCGTCCGGAAAGGAATGGAGTTACTTAAGGGGAGGGCTCACAACACT
TGATCGTGACTATGGATGGTTCAATAACATCCACCACGATATTGGAACCC
ACGTCATACATCACCTCTTCCCTCAGATCCCGCATTACCACTTAATAGAA
GCAACTGAGGCTGCTAGACCAGTTCTTGGAAAATATTACCGTGAGCCAAA
GAAATCGGGACCGATACCTTTTAACCTTTTTGGAGATTTAATTAGAAGCA
TGAGTAAAGACCACTATGTTAGTGACAATGGCGATGTTGTTTACTACCAG
ACCGACCCACAGCTTAACGGCTCTTCAAAATCAGGGTAAAGCCGGCAAGC
TTTCTTATCTTGAACCGGCGTATTTAAATACCTTTAGCAATCCTTAAGCA
GTCTTATAATCTACAATGATTTGACGATCCCCATTTCGGTACGGGATTCC
CTATTTATTACAAGATGAATTGGCATCTAACAAAGATGATTGCGGCTGCT
TCTTGAAATTAAGGCAGAATACATGAGAGTTTTCCACATTTGGAAGTAAT
TCTGAAGGGAAAATGTATATAATTCTTCCTGAAGAGTTAATATTCTCTTC
AGCATAATTATTCATGTATTGTNTAAACAAAACTTCATAGTTGAGGAAAA
GGTATGAGAAAATATTGAAAAATTTTGATCCAAAAAAAAAAAAAAAAAAA
AAGGG
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