EY756314 | Citrus Genome Database

Overview


Name	EY756314
Unique Name	EY756314
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	511

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7003	contig	Csv1_Contig7003:111..616.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY756314 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 2

Query:    5 ASGHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 268
            A  HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of EY756314 vs. ExPASy Swiss-Prot

BLAST of EY756314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
H4_SILLA	4.782e-42	97.73	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	4.782e-42	97.73	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	4.782e-42	97.73	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	4.782e-42	97.73	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	4.782e-42	97.73	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	4.782e-42	97.73	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	4.782e-42	97.73	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	4.782e-42	97.73	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE...	[more]
H42_WHEAT	4.782e-42	97.73	Histone H4 variant TH091 OS=Triticum aestivum PE=3...	[more]
H41_WHEAT	4.782e-42	97.73	Histone H4 variant TH011 OS=Triticum aestivum PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS13-C1-001-007-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756314 ID=EY756314; Name=EY756314; organism=Citrus sinensis; type=EST; length=511bp
CCACGCGTCCGGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCA
CAAAGCCCGCAATCCGGCGTCTGGCTCGTCGGGGTGGGGTGAAGCGTATC
AGTGGGTTGATCTACGAGGAGACACGTGGCGTTCTGAAGATCTTTTTGGA
GAACGTCATCCGCGACGCCGTGACTTACACTGAGCACGCTCGGAGGAAGA
CTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGCAGGACT
CTCTATGGGTTTGGTGGTTAAAGAAGTTGGTATCGCTTGTTTGTGATGGT
TGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTTTTGTGGTTCTGTTTCTA
GGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAAATGGGAATCTTGGTTTA
ATTTGTTAATGGTGTTTTCATTTTGTAACGTTAATTACCCCTATGATTTT
GAGTAGAATTAACGATAGATCGTTGTGAAGCTTCTTGGTATAAACACTGC
TGGTTCATTTG