EY756313

Overview
NameEY756313
Unique NameEY756313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1658 contig Csv1_Contig1658:100..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLAAETRKRPEEMRQRHR 416
            SL +RN+    RPE+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A +++N K   GR+I +  A   RK P +M+ + R
Sbjct:   11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLAAETRKRPEEMRQR 410
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLAAETRKRPEEMRQR 410
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY756313 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  144 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRWAGREISVVLA 371
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
The following BLAST results are available for this feature:
BLAST of EY756313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SRR35_HUMAN1.816e-1645.0535 kDa SR repressor protein OS=Homo sapiens GN=SRR... [more]
SF13A_MOUSE4.045e-1646.07Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]
SF13A_HUMAN4.045e-1646.07Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]
SFRS2_RAT5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN5.117e-1147.37Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-B10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756313 ID=EY756313; Name=EY756313; organism=Citrus sinensis; type=EST; length=844bp
CCCGCGTCCGATCCATCTGTATGAATACTATATTCTCTTTCTCCGAAGCA
TAGCGTATCAGTGGTTTCCGATTATATCTTCCGAGAAGAGGATACGGTGG
CGGTGGAGGAGGCTATGGAAGACGCAAGGAACAGAATCATGGTAGCCTTT
TGGTTCGAAACATTCCGCTTGATTGCAGGCCTGAAGAACTCCGTGCTCCA
TTCGAGAGGTTTGGGGTTGTTAGGGATGTCTACCTTCCTAAGGATTACTA
CACTGGGGAACCTCGAGGGTTTGCATTTGTGCAATTTGTGGATCCTTATG
AAGCTGCTGAAGCTCAACACCATATGAATGGGAAACGTTGGGCTGGGAGG
GAAATATCTGTAGTCCTTGCTGCAGAGACAAGGAAAAGGCCGGAGGAGAT
GCGCCAAAGACATAGGTTTAGAGGAGGGTCGAGCTATGGAGGACCGCGAT
CATCTTATTATGGACGTTATCGGTCCCGCTCACTATCCCGTTCACGTTCC
CCTCATCATCCTCAAGGGTCTAGAAGCCGGTACCGCTCTAGATCTTACAC
TCCTGTCCCAAGACAACACGAAGATTACTCAATTTCTCCTCGGAGAAGCT
CATAGAACACCCAGGATCACGGAGAGGTCCTCCACAAGAGCGAGGTGCTG
AATACAGGCGCACATCATACTCTCATGGATATGATGGTTCTGCTGATCCG
CGGACCCCAATGGCAATGGNTATGGTGAGAACTCTGGCTATGAGGAGACA
CAGGCTCACTGAAGGTCACCGGCACCTCGGGGAGAGACAAGGCCTCCCTC
TGGATCTAAATTAGGTCTAGGGTAGGCGATCTGGCCCCCAGACC
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