EY756305

Overview
NameEY756305
Unique NameEY756305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 1
Query:  118 LLPMTVKQXXXXXXXXXXXXX-IDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRG--GSSNQPQMTNSN 540
            L P+T+KQ              IDG +V  +T VG++ ++  +     + I+DGTG IE   W H     + +++++   YVRVYG++K F  K  + +  +R I D NE+  HF+E I V L+ T+       +N P    SN
Sbjct:   50 LRPVTIKQILNASQVHADAEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEH----IDALSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAPGYGTSN 189          
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 43/157 (27.39%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   73 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSS-NQPQMTN 534
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W        E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E +   L  ++    +S  +P M+N
Sbjct:   30 PTPSQAEKKSRARAQHIVPCTISQLLSATLTDEVFK-IGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSN 185          
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 39/135 (28.89%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   73 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECI 471
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W       +E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E I
Sbjct:   30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFR-IGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI 163          
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_MOUSE (Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 42/157 (26.75%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   73 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRG-GSSNQPQMTN 534
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W        E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E +   +  ++     S+ +P M+N
Sbjct:   30 PTPSQAEKKSRVRAQHIVPCTISQLLSATLTDEVFR-IGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPSMSN 185          
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 39/135 (28.89%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   73 PDPSSSFSKNR-NVRTLLPMTVKQXXXXXXXXXXXXXIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECI 471
            P PS +  K+R   + ++P T+ Q             I   +++ +T+VGI+   +      ++ IDD T   ++  +W       +E   +    YV+V GHL++FQ+K+SL A+ + P+ D NE T+H +E I
Sbjct:   30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFR-IGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVI 163          
BLAST of EY756305 vs. ExPASy Swiss-Prot
Match: RFA2_YEAST (Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 45/168 (26.79%), Postives = 73/168 (43.45%), Query Frame = 1
Query:   82 SSSFSKNRNVRTLLPMTVKQXXXXXXXXXXXXXID-GADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGM--------------YVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSSNQPQMTNSN 540
            S     N  V TL P+T+KQ             +    +++ +  VG+V ++ D        I+DGTG+IE  +W+ +  +    N  S G               YV+V+G LK F  K+++    ++PI  FNE+ +H +E I        +  G   QP  + SN
Sbjct:   27 SGESETNTRVNTLTPVTIKQILESKQDIQDGPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH----SIASGMMKQPLESASN 190          
The following BLAST results are available for this feature:
BLAST of EY756305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFA2_SCHPO6.033e-1331.94Replication factor A protein 2 OS=Schizosaccharomy... [more]
RFA2_RAT1.486e-1127.39Replication protein A 32 kDa subunit OS=Rattus nor... [more]
RFA2_PONAB5.647e-1128.89Replication protein A 32 kDa subunit OS=Pongo abel... [more]
RFA2_MOUSE5.647e-1126.75Replication protein A 32 kDa subunit OS=Mus muscul... [more]
RFA2_HUMAN5.647e-1128.89Replication protein A 32 kDa subunit OS=Homo sapie... [more]
RFA2_YEAST9.632e-1126.79Replication factor A protein 2 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-007-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756305 ID=EY756305; Name=EY756305; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGATTCGACGGAGCTGCCGCCTTTGCCGGCGGTGGATTTAT
GCCGTCTCAGGCCACCACTGTTCCTGATCCCTCCTCTTCTTTCTCTAAAA
ATCGTAATGTGCGGACCTTGCTGCCGATGACTGTTAAACAATTAAGTGAA
TTATCAAGTAATGATGAATCGAGTGCTAGCATTGATGGAGCAGATGTCAA
CACTATTACAGTTGTGGGGATAGTTTGTGATATGCAAGACAAAGAACCTC
AGTTTATATTCCTTATTGATGATGGCACTGGACGGATTGAGTGCAGTAGA
TGGGCTCATGAACAGATGGAGTTCAATGAAGTGAATCAAATCTCGAAAGG
AATGTATGTTCGTGTTTATGGACACTTGAAGGCTTTTCAGGATAAAAGAA
GCTTAAATGCATACTCCCTTCGGCCTATCATTGACTTTAATGAGATTACA
AGCCATTTCGTCGAGTGTATATATGTCCAACTCTACAACACCAGGTTACG
GGGTGGCAGCAGTAATCAACCCCAGATGACNAATTCTAACATTTGAAGGG
ATACAATGCTATTTCCTCTAATCACTATAGCTTTGATGAAGGAAAGAGCA
TTGATCAGATGGTGGTAGACTTTTTGAGAAGACCTGAGTTTCTTGCAAAT
AACNATGGAGTTCATCGCAATGTGATTTCTCAACAGCTAAATCTGCCCAT
GGATAAGCTCATGGAAGCTTTTAAATCTCTTAACGAAAATAGCTTGGGTT
ACTCCATCGATGAGTTTCACTATAAATCAGCTGTCAATGCATGACATGTC
GGGCCAAAATATGCCCATTTGCCAGCCTGCTATCCCTCTGCAGGTACTCG
CATCGNTCATACTTCATGGGCTGAACTTGTTCAAAACTGTA
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