EY732176

Overview
NameEY732176
Unique NameEY732176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12112 contig Csv1_Contig12112:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIAS_HUMAN (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.106e-49
Identity = 99/207 (47.83%), Postives = 124/207 (59.90%), Query Frame = 3
Query:  168 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            P +   +L   +  L    P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA  GLDYVV+T VDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   + +VA  G
Sbjct:   24 PVRPLSSLPDKKKELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQKGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSG 230          

HSP 2 Score: 25.409 bits (54), Expect = 3.106e-49
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEELQ 814
            S L+V+AHN+E V ELQ
Sbjct:  229 SGLDVYAHNVETVPELQ 245          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIAS_BOVIN (Lipoyl synthase, mitochondrial OS=Bos taurus GN=LIAS PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.964e-49
Identity = 89/152 (58.55%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA  GLDYVV+T VDRDD+ D G+ HFA+TV  LKE  P +L+E L PDFRG+   + +VA  G
Sbjct:   79 WLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSG 230          

HSP 2 Score: 25.409 bits (54), Expect = 8.964e-49
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEELQ 814
            S L+V+AHN+E V ELQ
Sbjct:  229 SGLDVYAHNVETVPELQ 245          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIAS_MOUSE (Lipoyl synthase, mitochondrial OS=Mus musculus GN=Lias PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.985e-48
Identity = 97/188 (51.60%), Postives = 118/188 (62.77%), Query Frame = 3
Query:  225 PALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA  GLDYVV+T VDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA  G
Sbjct:   42 PDLQDFVSGDLADKSTWDEYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSG 229          

HSP 2 Score: 25.409 bits (54), Expect = 1.985e-48
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEELQ 814
            S L+V+AHN+E V ELQ
Sbjct:  228 SGLDVYAHNVETVPELQ 244          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIAS_RAT (Lipoyl synthase, mitochondrial OS=Rattus norvegicus GN=Lias PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.587e-48
Identity = 97/196 (49.49%), Postives = 119/196 (60.71%), Query Frame = 3
Query:  201 RARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            + +     P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A AIA  GLDYVV+T VDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA  G
Sbjct:   34 KKKFLHNGPDLQDFVSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSG 229          

HSP 2 Score: 25.409 bits (54), Expect = 2.587e-48
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 SRLNVFAHNLERVEELQ 814
            S L+V+AHN+E V ELQ
Sbjct:  228 SGLDVYAHNVETVPELQ 244          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_SCHPO (Lipoyl synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC8D2.15 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 8.787e-46
Identity = 91/200 (45.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:  195 GLRARLASESPALSDFIDLQS--------NSSYSVEVGTXXXXXXXXXWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            G   +LA + P+ +DF+++               VE+           W+K  +P G  + +IK  LR   LHTVCEEAKCPN+GECW G +   ATATIM++GDTCTRGCRFC+VKTSR           N AEAI    L Y+V+T VDRDDL D G+ H A+T++K+KE  P++L+EAL PDF G    V  VA  G
Sbjct:   26 GFSEKLA-KGPSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECWGGKDKSRATATIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDFSGRMDLVEIVAKSG 224          

HSP 2 Score: 27.335 bits (59), Expect = 8.787e-46
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  761 QSRLNVFAHNLERVEEL 811
            +S L+VFAHN+E VEEL
Sbjct:  222 KSGLDVFAHNVETVEEL 238          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIP5_YEAST (Lipoyl synthase, mitochondrial OS=Saccharomyces cerevisiae GN=LIP5 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.913e-44
Identity = 84/152 (55.26%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K  IP G  Y ++K  ++EL L TVCEEA+CPN+GECW G +   ATATIM+LGDTCTRGCRFC+VKT+R           N AEAI   GL YVV+T VDRDDL D G+ H A+TVRK+K+  PN L+E L  DFRG+   V  +A  G
Sbjct:  123 WLKVPIPKGTNYHKLKGDVKELGLSTVCEEARCPNIGECWGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPMEPENTAEAIKRWGLGYVVLTTVDRDDLVDGGANHLAETVRKIKQKAPNTLVETLSGDFRGDLKMVDIMAQCG 274          

HSP 2 Score: 25.0238 bits (53), Expect = 7.913e-44
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  761 QSRLNVFAHNLERVEEL 811
            Q  L+V+AHNLE VE L
Sbjct:  272 QCGLDVYAHNLETVESL 288          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.568e-43
Identity = 80/152 (52.63%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K   P G+++  IK+ LR+  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+T VDRDDL DQG+GHFA+T+R++KE  P++L+E L PDF+G    V+++   G
Sbjct:    9 WLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAG 158          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_HALS3 (Probable lipoyl synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lipA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.568e-43
Identity = 80/152 (52.63%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREVASQG 770
            W+K   P G+++  IK+ LR+  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+T VDRDDL DQG+GHFA+T+R++KE  P++L+E L PDF+G    V+++   G
Sbjct:    9 WLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAG 158          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_ANADF (Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=lipA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.496e-42
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++ ++PGG +Y Q++  ++ L LHTVCEEA CPN+ ECW GG     TAT+M++GD CTRGCRFCNVKT             ++AEAIA  GLDY+V+T VDRDDL D G+GHFA  +R+LK++ P +L+E L PDFRG+   VR V
Sbjct:    8 WLRVNVPGGARYQQVRDTVKGLALHTVCEEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTDAHPPPLDPDEPRHLAEAIAELGLDYIVVTSVDRDDLPDGGAGHFADAIRRLKDI-PQLLVEVLTPDFRGDAEAVRTV 149          
BLAST of EY732176 vs. ExPASy Swiss-Prot
Match: LIPA_ANADE (Lipoyl synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lipA PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.484e-42
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  315 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASXGLDYVVITXVDRDDLXDQGSGHFAQTVRKLKELKPNMLIEALGPDFRGNNGCVREV 758
            W++ ++PGG++Y ++++ L+ L+LHTVC EA CPN+ ECW GG     TAT+M++GD CTRGCRFCNVKT+            ++A AIA  GLDY+V+T VDRDDL D G+ HFA  +R+LKE+ P +L+E L PDFRG+   VR V
Sbjct:    8 WLRVNVPGGERYQKVRETLKGLQLHTVCAEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTAAHPPALDPDEPRHLAAAIAELGLDYIVVTSVDRDDLPDGGAAHFADAIRRLKEI-PGLLVEVLTPDFRGDPAAVRTV 149          
The following BLAST results are available for this feature:
BLAST of EY732176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIAS_HUMAN3.106e-4947.83Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
LIAS_BOVIN8.964e-4958.55Lipoyl synthase, mitochondrial OS=Bos taurus GN=LI... [more]
LIAS_MOUSE1.985e-4851.60Lipoyl synthase, mitochondrial OS=Mus musculus GN=... [more]
LIAS_RAT2.587e-4849.49Lipoyl synthase, mitochondrial OS=Rattus norvegicu... [more]
LIPA_SCHPO8.787e-4645.50Lipoyl synthase, mitochondrial OS=Schizosaccharomy... [more]
LIP5_YEAST7.913e-4455.26Lipoyl synthase, mitochondrial OS=Saccharomyces ce... [more]
LIPA_HALSA6.568e-4352.63Probable lipoyl synthase OS=Halobacterium salinari... [more]
LIPA_HALS36.568e-4352.63Probable lipoyl synthase OS=Halobacterium salinaru... [more]
LIPA_ANADF2.496e-4253.38Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw... [more]
LIPA_ANADE9.484e-4252.03Lipoyl synthase OS=Anaeromyxobacter dehalogenans (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-056-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY732176 ID=EY732176; Name=EY732176; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCACAATCTCTAATTTTCTCTCTCTAAAGCTTCCCAGCCA
CCAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCT
AGCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAA
CCCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTC
CGTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCT
CCAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCC
TTCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATAC
GTTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGA
AGAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGG
GCACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGT
TGCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCC
AGACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGNGGTTTGGATT
ATGTGGTGATTACTANTGTTGATAGAGATGATTTANCTGATCAGGGAAGT
GGGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATAT
GCTTATTGAAGCATTGGGTCCTGATTTTCGCGGGAACAACGGGTGTGTCC
GGGAAGTTGCCAGTCAAGGTTGAATGTCTTTGCTCATAATTTGGAAAGGG
TGGAAGAGCTTCAAGTGGGGTGAGGGGATACGTT
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