EY756285

Overview
NameEY756285
Unique NameEY756285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:1158..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.074e-13
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  118 VTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.074e-13
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  234 VTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.621e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  233 VTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.621e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  233 VTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.621e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  231 VTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.621e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  231 VTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.036e-13
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  233 VTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.345e-12
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:  205 VTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:  233 VTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of EY756285 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3
Query:   12 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 110
            VTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  232 VTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of EY756285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CB22_PINSY2.074e-1396.97Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH2.074e-1396.97Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP4.621e-1393.94Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC4.621e-1393.94Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ4.621e-1393.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.621e-1393.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI6.036e-1393.94Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.345e-1296.97Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA2.995e-1287.88Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI3.912e-1293.94Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-G12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756285 ID=EY756285; Name=EY756285; organism=Citrus sinensis; type=EST; length=288bp
CCACGCGTCCGGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCTGTA
ACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGGAC
TTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGATCT
TTTATTTCCNNAAAAAAAAAAAAAAAAAAAAAAAAAAA
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