EY756276 | Citrus Genome Database

Overview


Name	EY756276
Unique Name	EY756276
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	912

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.958e-19
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGRI M+ T  SAP S+ +GPD  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   30 GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 137

HSP 2 Score: 36.5798 bits (83), Expect = 4.958e-19
Identity = 36/116 (31.03%), Postives = 46/116 (39.66%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI--------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+L+  H    +    V  +L  +   YR+        L         +   A             AELKVKELKNGR A      +  + I T  G I      VADP
Sbjct:  140 GLDYLGNPNLV--HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKV------YPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.958e-19
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGRI M+ T  SAP S+ +GPD  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   30 GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 137

HSP 2 Score: 36.5798 bits (83), Expect = 4.958e-19
Identity = 36/116 (31.03%), Postives = 46/116 (39.66%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI--------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+L+  H    +    V  +L  +   YR+        L         +   A             AELKVKELKNGR A      +  + I T  G I      VADP
Sbjct:  140 GLDYLGNPNLV--HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKV------YPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.511e-17
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGR+ M+ T  SAP S+ +G D  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:    4 GGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFS 111

HSP 2 Score: 35.039 bits (79), Expect = 1.511e-17
Identity = 34/116 (29.31%), Postives = 46/116 (39.66%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI--------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+LI  H    +       +L  +   YR+        L         +   A             AELKVKE+KNGR A      +  + I T  G I   +  +ADP
Sbjct:  114 GLDYLGNPNLI--HAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKI------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.304e-17
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGR  M+ T  SAP S+ +G D  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   32 GGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFS 139

HSP 2 Score: 35.039 bits (79), Expect = 4.304e-17
Identity = 35/116 (30.17%), Postives = 45/116 (38.79%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI--------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+LI  H    +       +L  +   YR+        L         +   A             AELKVKE+KNGR A      +  + I T  G I      VADP
Sbjct:  142 GLDYLGNPNLI--HAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKI------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-16
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGR+ M+ T  SAP S+ +GPD  +YL P S++  S L G+ P DY W T  L     TFA+N EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   32 GGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFS 139

HSP 2 Score: 33.113 bits (74), Expect = 1.229e-16
Identity = 34/119 (28.57%), Postives = 45/119 (37.82%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI-----------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+LI  H    +       +L  +   YR+           +Y            A             AELKVKE+KNGR A      +  + I T  G I      +ADP
Sbjct:  142 GLDYLGNPNLI--HAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIY---------PGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.229e-16
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 2

Query:  155 GGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GGR  M+ T  SAP S+ +G D  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   32 GGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFS 139

HSP 2 Score: 33.4982 bits (75), Expect = 1.229e-16
Identity = 34/110 (30.91%), Postives = 47/110 (42.73%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAH--ISYCMMXLPVPALLDWYTMRYRILYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+LI A   ++     + +  L++ Y +    L         +   A             AELKVKE+KNGR A      +  + I T  G I      VADP
Sbjct:  142 GLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEG--LDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.700e-16
Identity = 45/107 (42.06%), Postives = 56/107 (52.34%), Query Frame = 2

Query:  158 GRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GRI M+ T  SAP S+ +G D  +YL P SE+T S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   33 GRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFS 139

HSP 2 Score: 32.7278 bits (73), Expect = 2.700e-16
Identity = 32/116 (27.59%), Postives = 45/116 (38.79%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI--------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+L+  H    +       +L  +   YR+        L         +   A             AELKVKE+KNGR A      +  + I T  G I   +  + DP
Sbjct:  142 GLDYLGNPNLV--HAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKI------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.706e-16
Identity = 41/106 (38.68%), Postives = 53/106 (50.00%), Query Frame = 2

Query:  161 RIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            R  M+ T  SAP S+ +GPD  +YL P SE+  S L G+ P DY W T  L     TFARN EL  +  R + L A  C  P  L         A+  + G +IF+
Sbjct:   34 RFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFA 139

HSP 2 Score: 36.5798 bits (83), Expect = 7.706e-16
Identity = 37/119 (31.09%), Postives = 45/119 (37.82%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAHISYCMMXLPVPALLDWYTMRYRI-----------LYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+LI  H    +       +L  +   YR+           LY            A             AELKVKELKNGR A      +  + I T  G I      VADP
Sbjct:  142 GLDYLGNPNLI--HAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLY---------PGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.713e-15
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 2

Query:  137 KSLHTIGGRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            K + T   RI M+ T  SAP S+ +GPD  +YL P SE T S L G+ P DY W T  +     TFA+N EL  +  R + L A  C  P  L+        A+  + G +IFS
Sbjct:   27 KKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFS 140

HSP 2 Score: 31.5722 bits (70), Expect = 3.713e-15
Identity = 33/110 (30.00%), Postives = 45/110 (40.91%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAH--ISYCMMXLPVPALLDWYTMRYRILYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY GNP+LI A   ++     + +  L++ Y +    L             A             AELKVKE+KNGR A      +  + I T  G I      +ADP
Sbjct:  143 GLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEG--LDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250

[Close]

BLAST of EY756276 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.323e-14
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 2

Query:  158 GRIPMKTTATSAPLSV*HGPDH*QYLKPLSEETRSDLCGQPPADYLWPTGRLLPVLRTFARNIELPEVQMR*SALAAPVCNDPADLSTKVANAANAIV*EGGYRIFS 478
            GR  M+ T  + P S+ +G D  ++L P SE+T S L G+ P DY W T  L     TFA+N EL  +  R + L A  C  P  LS        A+  + G +IFS
Sbjct:   32 GRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFS 138

HSP 2 Score: 33.4982 bits (75), Expect = 2.323e-14
Identity = 32/110 (29.09%), Postives = 47/110 (42.73%), Query Frame = 3

Query:  486 GLDYIGNPDLIIAH--ISYCMMXLPVPALLDWYTMRYRILYSC*LT*TQFACSAHXXXXXXXXXXXXAELKVKELKNGRRARGIKLAYSGKXIDTAYGTIAYFNLLVADP 809
            GLDY+GNP+L+ A   ++     + +  L++ Y +    L         +   A             AELKVKE+KNGR A      +  + I T  G I      +ADP
Sbjct:  141 GLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEG--LDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248

The following BLAST results are available for this feature:

BLAST of EY756276 vs. ExPASy Swiss-Prot

BLAST of EY756276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13


Match Name	E-value	Identity	Description
CB23_ORYSJ	4.958e-19	43.52	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	4.958e-19	43.52	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB25_SOLLC	1.511e-17	41.67	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB26_PETSP	4.304e-17	41.67	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB21_GOSHI	1.229e-16	39.81	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB23_TOBAC	1.229e-16	41.67	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB24_SOLLC	2.700e-16	42.06	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB215_PEA	7.706e-16	38.68	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB21_PINTH	3.713e-15	38.60	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB21_LEMGI	2.323e-14	37.38	Chlorophyll a-b binding protein of LHCII type I, c...	[more]

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Properties


Property Name	Value
Genbank description	CS13-C1-001-006-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY756276 ID=EY756276; Name=EY756276; organism=Citrus sinensis; type=EST; length=912bp
TGCGTCAACCCACGCGTCCGGGAGCGTCTTTCCCTGAGAAGCGATGTACG
GTAAGATCATAGGGGAACCTCTGCTAGATGTCACTGGGCTCGCCGTGGGC
GGACCCCCTTAACTGCATCCACTGCACTTGGCCGAAAAGTCTCTACATAC
TATCGGTGGACGGATTCCCATGAAGACTACTGCCACTTCCGCTCCCCTGA
GCGTCTGACATGGTCCTGACCACTGACAATACTTGAAACCCCTATCTGAG
GAAACACGATCTGACTTGTGTGGTCAGCCCCCTGCGGACTACTTGTGGCC
TACCGGACGGCTTCTCCCTGTACTCCGAACATTTGCTAGGAACATCGAGC
TACCTGAGGTCCAAATGAGATGATCTGCCCTTGCTGCTCCTGTTTGCAAC
GACCCTGCTGATCTCTCCACAAAAGTTGCGAATGCTGCCAATGCTATTGT
CTGAGAGGGTGGTTATCGGATATTCTCTGGACTGTGGTCTTGACTATATC
GGCAACCCTGACCTTATCATTGCTCACATTTCCTACTGTATGATGGNTCT
GCCTGTTCCTGCTTTGCTAGACTGGTATACGATGAGATATCGGATTCTCT
ACTCATGCTAATTGACATGAACTCAATTCGCGTGTAGTGCTCATGACTCA
CGTCGTTTGAGAGATGATCGCATTCTTCTTGCTGAGTTGAAAGTCAAAGA
GCTCAAGAATGGCCGCCGGGCTAGAGGCATCAAGCTTGCATACTCTGGCA
AGCNTATTGACACCGCGTACGGTACGATTGCATACTTCAACTTACTCGTC
GCTGATCCTAGAGGGCACGATTGCTGAAAACTCTGCCGTTACCTTTGTTC
CGGCATGGAAGAAACTCCCGCTTCGCGGTTGGCTGTTCAGCGAAAGGCTC
CCCAGTTCCCCT