EY756239

Overview
NameEY756239
Unique NameEY756239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5675 contig Csv1_Contig5675:320..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   18 LLPGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            L P  +I+   EL+ LNR +  + L+L + L+E P  Y  ++EDISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E IK+  +  +  L  S   L
Sbjct:  178 LYPKGDIEPISELKKLNRSILFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKALDICKESLMNSFKNL 281          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 38/101 (37.62%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   33 NIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++ED++L+F ++HHLLN  RPHQAR TL  ++ELQ ++R++  +  +   E+ +  +  +  +L
Sbjct:   73 HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   33 NIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            + D +KEL+ LN  L ++ L+L D+LV  P   + A ++ED+SL+F ++HHLLN  RPHQAR TL  ++ELQ ++R +  +  +   E+ +  +K +  +L
Sbjct:   73 HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_PIG (Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa GN=MED7 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_MOUSE (Mediator of RNA polymerase II transcription subunit 7 OS=Mus musculus GN=Med7 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_HUMAN (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_BOVIN (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus GN=MED7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_COCIM (Mediator of RNA polymerase II transcription subunit 7 OS=Coccidioides immitis GN=MED7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 3
Query:   27 GPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            GP+ D    L  +++ L L+ LEL  +L   P QY  ++EDI  +F N HHLLN  RPHQ+R +LI ++E Q+++ K+ + ++++ +E  +  L+E
Sbjct:  111 GPSPDHAYYLLKISKSLLLNFLELVGILSINPEQYEPKIEDIRNLFINAHHLLNLYRPHQSRESLITMMEEQLEQAKEEIREMEQTKERVEIYLRE 206          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_CANGA (Mediator of RNA polymerase II transcription subunit 7 OS=Candida glabrata GN=MED7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   48 KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE 314
            KELR L+  L L+ +EL  VL   P  Y  +VE+I  I  N+HHLLN  RPHQ+R +LI +LE Q++ +KQ V +I+   ++   +LK+
Sbjct:  109 KELRRLSYSLLLNFVELVGVLSVNPELYESKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEHKKQEVANIELVCQQVTEKLKQ 197          
BLAST of EY756239 vs. ExPASy Swiss-Prot
Match: MED7_DANRE (Mediator of RNA polymerase II transcription subunit 7 OS=Danio rerio GN=med7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 35/99 (35.35%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   39 DFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 329
            D K+EL+ LN  + ++ L+L D+L++ P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct:   73 DHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSL 171          
The following BLAST results are available for this feature:
BLAST of EY756239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MED7_DICDI1.215e-1743.27Putative mediator of RNA polymerase II transcripti... [more]
MED7_AEDAE1.642e-1437.62Mediator of RNA polymerase II transcription subuni... [more]
MED7_ANOGA2.802e-1438.61Mediator of RNA polymerase II transcription subuni... [more]
MED7_PIG1.390e-1337.37Mediator of RNA polymerase II transcription subuni... [more]
MED7_MOUSE1.390e-1337.37Mediator of RNA polymerase II transcription subuni... [more]
MED7_HUMAN1.390e-1337.37Mediator of RNA polymerase II transcription subuni... [more]
MED7_BOVIN1.390e-1337.37Mediator of RNA polymerase II transcription subuni... [more]
MED7_COCIM1.816e-1337.50Mediator of RNA polymerase II transcription subuni... [more]
MED7_CANGA2.372e-1343.82Mediator of RNA polymerase II transcription subuni... [more]
MED7_DANRE6.901e-1335.35Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-C02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756239 ID=EY756239; Name=EY756239; organism=Citrus sinensis; type=EST; length=608bp
CCACGCGTCCGTCAGCTTTACTTCCAGGACCAAATATTGATTTCAAGAAA
GAACTGAGGTCACTGAACAGAGAATTGCAGCTGCACATATTGGAACTTTC
TGATGTCCTTGTTGAGAGACCATCTCAATATGCCAGGAGAGTGGAAGACA
TATCTCTTATATTCAAGAACTTGCATCATCTTCTCAATTCATTACGTCCT
CATCAGGCTAGAGCAACATTAATACATATCCTAGAACTTCAGATACAGCG
CCGTAAACAAGCTGTGGAGGATATAAAGAGGCGGAGAGAAGAAGCACAAC
GACGTCTCAAGGAGTCCCTTGGAACCTTAGAGGGACAGTAGCGCATTTGA
GAACTGTATCTATACTGACGGGAGATTCTACTGGCAAGATTGCTAGAAGT
TTCTGTTATCTAATGTCTGGAGATAGTGAATATTGATAACAAGTACAGTT
TTGCAATCCGGGAGTCTTCATATATTGTAGGCAGCTTCAATTGTGAAAAA
TTACATTCTGTGCATTAGTAGTTTGTCTTGGAAGATGGTACTGATATATT
ATCTAATATTGNTAGCATGTTTATTATCAAACATAAATTTGACCAAAAAA
AAAAAAAA
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